GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000199-TA|BGIBMGA000199-PA|undefined
         (114 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q47H56 Cluster: Major facilitator superfamily MFS_1 pre...    33   0.89 
UniRef50_A1VQR2 Cluster: Sensor protein; n=1; Polaromonas naphth...    32   2.7  
UniRef50_Q0SBH3 Cluster: ABC peptide transporter, permease compo...    31   3.6  
UniRef50_A6QZ37 Cluster: Predicted protein; n=1; Ajellomyces cap...    31   4.7  
UniRef50_Q7QS58 Cluster: GLP_74_2638_4671; n=1; Giardia lamblia ...    30   8.3  

>UniRef50_Q47H56 Cluster: Major facilitator superfamily MFS_1
           precursor; n=1; Dechloromonas aromatica RCB|Rep: Major
           facilitator superfamily MFS_1 precursor - Dechloromonas
           aromatica (strain RCB)
          Length = 402

 Score = 33.5 bits (73), Expect = 0.89
 Identities = 16/40 (40%), Positives = 22/40 (55%)

Query: 3   GTLVDRLPLPNLKVYTAGSVLLLSIAVYHATIVTSDPNWR 42
           G+LVDR   P L +Y A  VLL+ +A+    + T    WR
Sbjct: 361 GSLVDRFGWPALNLYAAIPVLLIMLAILGRWLATGRRQWR 400


>UniRef50_A1VQR2 Cluster: Sensor protein; n=1; Polaromonas
           naphthalenivorans CJ2|Rep: Sensor protein - Polaromonas
           naphthalenivorans (strain CJ2)
          Length = 589

 Score = 31.9 bits (69), Expect = 2.7
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 20  GSVLLLSIAVYHATIVTSDPNWRAN-ITLQRQEALAEPDGEAQLVDQAEVM 69
           GSV  L++ + HAT+   +P W+ +   LQ    L   D EA ++  A+++
Sbjct: 436 GSVFRLALPLSHATVAPVEPVWKPDPAHLQGMHVLVVDDDEAVVLGMAQLL 486


>UniRef50_Q0SBH3 Cluster: ABC peptide transporter, permease
           component; n=1; Rhodococcus sp. RHA1|Rep: ABC peptide
           transporter, permease component - Rhodococcus sp.
           (strain RHA1)
          Length = 319

 Score = 31.5 bits (68), Expect = 3.6
 Identities = 15/55 (27%), Positives = 27/55 (49%)

Query: 58  GEAQLVDQAEVMPALNLNATRNLNERMVVIITFMMQEPLCMWVVIKCLVEKVHTW 112
           G A LV+   V P L L     +N R   ++  ++   + ++VV++ L +  H W
Sbjct: 254 GGAVLVESIFVWPGLGLLTEEAINSRDYPLVQVLLVLSVAVFVVLQLLTDVAHAW 308


>UniRef50_A6QZ37 Cluster: Predicted protein; n=1; Ajellomyces
          capsulatus NAm1|Rep: Predicted protein - Ajellomyces
          capsulatus NAm1
          Length = 1336

 Score = 31.1 bits (67), Expect = 4.7
 Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 4/76 (5%)

Query: 4  TLVDRLPLPNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPDGEAQLV 63
          T V  LPL  L +Y A   +L S+ ++H  +VT++   R++    R +A     G  Q  
Sbjct: 6  TSVAGLPLEQLTLYHAVDPILSSVLIFHGPVVTANSTVRSS----RFQAHIIAPGGVQSY 61

Query: 64 DQAEVMPALNLNATRN 79
           +  + PA  L A  N
Sbjct: 62 PRLTISPAGPLYAAVN 77


>UniRef50_Q7QS58 Cluster: GLP_74_2638_4671; n=1; Giardia lamblia
           ATCC 50803|Rep: GLP_74_2638_4671 - Giardia lamblia ATCC
           50803
          Length = 677

 Score = 30.3 bits (65), Expect = 8.3
 Identities = 28/113 (24%), Positives = 52/113 (46%), Gaps = 5/113 (4%)

Query: 4   TLVDRLPLPNLKV---YTAGSVLLLSIAVYHATIVTSD-PNWRANITLQRQEALAEPDGE 59
           + + R  +P LK+   Y+     ++S A  +A I     P++ A++ + R      P+GE
Sbjct: 285 SFITRSRIPVLKISLKYSKRLCQVVSAAETNAKIEQGLLPSYYADLPMNRSVQFIVPEGE 344

Query: 60  AQLVDQAEVMPALNLNATRNLNERMVVIITFMMQEPLCMWVVIKCLVEKVHTW 112
            ++    +    L LN    LN R+ +  T ++ E L    V+  L+  V +W
Sbjct: 345 EKINTHIDSDMML-LNVDICLNNRLAIRNTLLLAEYLRADPVVSPLIRCVKSW 396


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,001,038
Number of Sequences: 1657284
Number of extensions: 3665978
Number of successful extensions: 8534
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 8531
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 575,637,011
effective HSP length: 89
effective length of query: 25
effective length of database: 428,138,735
effective search space: 10703468375
effective search space used: 10703468375
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)