GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000199-TA|BGIBMGA000199-PA|undefined
         (114 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0612 - 19228262-19228570,19229955-19230404                       28   2.0  
05_02_0040 + 5904169-5904304,5904382-5904938                           27   2.7  
09_06_0363 - 22551848-22552915                                         27   4.7  
01_06_0293 - 28254673-28254878,28255189-28255306,28255767-282559...    26   6.2  
04_04_0214 - 23674270-23676858,23677574-23680843,23680941-236811...    26   8.2  

>10_08_0612 - 19228262-19228570,19229955-19230404
          Length = 252

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 20/59 (33%), Positives = 29/59 (49%), Gaps = 11/59 (18%)

Query: 9  LPLPNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPDGEAQLVDQAE 67
          +P P L+VYT+  +L   +A  H   V+S             EA+A PDGE   V++ E
Sbjct: 32 IPPPRLRVYTSHRLLSSLLAPSHVPAVSS-----------LAEAVAAPDGEGVEVEEEE 79


>05_02_0040 + 5904169-5904304,5904382-5904938
          Length = 230

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 24/96 (25%), Positives = 44/96 (45%), Gaps = 2/96 (2%)

Query: 12  PNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANI-TLQRQEALAEPDGEAQLVDQAEVMP 70
           P+     + + ++L+ AVY    VTS P+ R     L+R +  A P G    +      P
Sbjct: 118 PHYHPRASETAVVLAGAVYFG-FVTSYPDSRVVAKVLRRGDVFAVPQGLVHFLHNNGSEP 176

Query: 71  ALNLNATRNLNERMVVIITFMMQEPLCMWVVIKCLV 106
           A    +  + N  +V++   ++  PL + +V K L+
Sbjct: 177 AALYASLSSQNPGLVLVADALLAAPLPVDLVAKTLL 212


>09_06_0363 - 22551848-22552915
          Length = 355

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/40 (35%), Positives = 22/40 (55%)

Query: 29  VYHATIVTSDPNWRANITLQRQEALAEPDGEAQLVDQAEV 68
           V  +T++ SDP  RA +T      LAE + E +   +A+V
Sbjct: 206 VSSSTVLVSDPGLRARLTHMGAAQLAELEDEEEPSREADV 245


>01_06_0293 -
           28254673-28254878,28255189-28255306,28255767-28255961,
           28256701-28256800,28256887-28256972,28257078-28257239,
           28257965-28258101,28258233-28258281,28258688-28258746,
           28258862-28258896,28259384-28259433,28260173-28260332,
           28260898-28260963,28261065-28261162,28261649-28261696,
           28262114-28262242,28262667-28262769,28262858-28262954,
           28263181-28263241,28263659-28263740,28263845-28263962,
           28264039-28266325
          Length = 1481

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 17/61 (27%), Positives = 34/61 (55%), Gaps = 4/61 (6%)

Query: 44  NITLQRQEA---LAEPDGEAQLVDQAEVMPA-LNLNATRNLNERMVVIITFMMQEPLCMW 99
           N TL  ++A   L++ +GE Q +++A ++PA L    + +  E++ V +   + + L  W
Sbjct: 420 NATLGPEDAVTGLSQQEGEVQELEEATLLPASLAFERSDSFQEKITVEMKKELSDFLPSW 479

Query: 100 V 100
           V
Sbjct: 480 V 480


>04_04_0214 - 23674270-23676858,23677574-23680843,23680941-23681119,
            23681200-23681559,23681645-23682086,23682199-23682332,
            23682479-23682680
          Length = 2391

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 3/61 (4%)

Query: 5    LVDRLP-LPNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPDGEAQLV 63
            + + +P  P  K++ +G      + V H+  +++D + R +        L++ DGEA L+
Sbjct: 1837 MYEEIPSFPRHKIFASGKSF--PVIVRHSNSLSADDDARLDARGAAVRILSDNDGEAPLL 1894

Query: 64   D 64
            D
Sbjct: 1895 D 1895


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,012,197
Number of Sequences: 37544
Number of extensions: 94479
Number of successful extensions: 197
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 195
Number of HSP's gapped (non-prelim): 5
length of query: 114
length of database: 14,793,348
effective HSP length: 73
effective length of query: 41
effective length of database: 12,052,636
effective search space: 494158076
effective search space used: 494158076
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 54 (25.8 bits)