GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000199-TA|BGIBMGA000199-PA|undefined
         (114 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical pr...    29   1.0  
Z81524-7|CAD54143.1|  118|Caenorhabditis elegans Hypothetical pr...    28   1.4  
AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine re...    28   1.8  
AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine re...    28   1.8  
Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical pr...    26   5.6  
AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm rece...    26   5.6  
U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical p...    25   9.8  
AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine re...    25   9.8  

>Z82089-1|CAB05002.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 51  EALAEPDGEAQLVDQAEVMPALNLNATR 78
           E   +PD  A+L+D A+  P + LNAT+
Sbjct: 210 ELFDQPDDAAKLLDSADGDPVIELNATK 237


>Z81511-2|CAB04167.1|  983|Caenorhabditis elegans Hypothetical
           protein ZK270.1 protein.
          Length = 983

 Score = 28.7 bits (61), Expect = 1.0
 Identities = 12/28 (42%), Positives = 18/28 (64%)

Query: 51  EALAEPDGEAQLVDQAEVMPALNLNATR 78
           E   +PD  A+L+D A+  P + LNAT+
Sbjct: 210 ELFDQPDDAAKLLDSADGDPVIELNATK 237


>Z81524-7|CAD54143.1|  118|Caenorhabditis elegans Hypothetical
          protein F32H5.8 protein.
          Length = 118

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)

Query: 27 IAVYHATIV-TSDPNWRANITLQRQEALAEPDGEAQLVDQAEV 68
          I V H  +  TSD N++ +   +  E    PD EA+++D+ EV
Sbjct: 16 ITVNHEPLTETSDENFKLHSVNEEYETEQFPDIEAEIIDKPEV 58


>AF125954-6|AAD14707.2|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein1 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 70  PALNLNATRNLNERMVVIITFMMQEPLCMWVVIK 103
           PAL +N   N+N  +V I T  +   LC +++ K
Sbjct: 193 PALYVNVLHNINNPIVAISTTFLYFYLCYYLIFK 226


>AC006769-7|AAF60589.1|  346|Caenorhabditis elegans Serpentine
           receptor, class t protein2 protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 1.8
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 70  PALNLNATRNLNERMVVIITFMMQEPLCMWVVIK 103
           PAL +N   N+N  +V I T  +   LC +++ K
Sbjct: 193 PALYVNVLHNINNPIVAISTTFLYFYLCYYLIFK 226


>Z67737-2|CAA91537.3|  400|Caenorhabditis elegans Hypothetical
           protein T01H10.2 protein.
          Length = 400

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 5/53 (9%)

Query: 3   GTLVDRLP----LPNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQE 51
           G + D++P    +P L VY   ++ ++ IA+   T++T   +W A   L+R E
Sbjct: 306 GVMADKIPRTGTIPMLGVYIIVNLAIMIIAIGIVTMITELRHWLAPF-LKRNE 357


>AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 13 protein.
          Length = 349

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 14/33 (42%), Positives = 19/33 (57%)

Query: 1   MPGTLVDRLPLPNLKVYTAGSVLLLSIAVYHAT 33
           +P T++  LPL NL V     V+L S A+Y  T
Sbjct: 267 IPITIIIFLPLFNLDVSLPSGVMLCSFALYPPT 299


>U27312-12|AAA68255.1|  451|Caenorhabditis elegans Hypothetical
           protein F26A1.13 protein.
          Length = 451

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 12/31 (38%), Positives = 18/31 (58%)

Query: 57  DGEAQLVDQAEVMPALNLNATRNLNERMVVI 87
           DG  +LV +A      +L A RNL+ R+ V+
Sbjct: 381 DGAVKLVKEAIEAVKYHLKAARNLDRRITVV 411


>AF067950-4|AAG24157.1|  351|Caenorhabditis elegans Serpentine
           receptor, class h protein87 protein.
          Length = 351

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 8   RLPLPNLKVYTAGSVLLLSIAVYH 31
           RLP P+   +TA ++ +L I  YH
Sbjct: 185 RLPCPSQDFFTASNIFVLCIDDYH 208


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,432
Number of Sequences: 27539
Number of extensions: 78769
Number of successful extensions: 167
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 159
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 12,573,161
effective HSP length: 72
effective length of query: 42
effective length of database: 10,590,353
effective search space: 444794826
effective search space used: 444794826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)