GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000199-TA|BGIBMGA000199-PA|undefined
         (114 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   0.89 
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    23   1.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   1.2  
DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex det...    21   2.7  
AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   2.7  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   3.6  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   3.6  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               20   8.3  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 0.89
 Identities = 10/39 (25%), Positives = 18/39 (46%)

Query: 31  HATIVTSDPNWRANITLQRQEALAEPDGEAQLVDQAEVM 69
           H+ +V   PN+   + L R      P+GE    D  +++
Sbjct: 645 HSLLVADRPNFVTILALVRDATARLPNGEGTRADICQLL 683


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 11/27 (40%), Positives = 19/27 (70%), Gaps = 1/27 (3%)

Query: 25  LSIAVYHATIVTSDPNWRANITLQRQE 51
           +++AVY   +V +D N+R NI+ + QE
Sbjct: 96  IAVAVYAFIVVKNDDNFR-NISEKYQE 121


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 1.2
 Identities = 9/30 (30%), Positives = 17/30 (56%)

Query: 3   GTLVDRLPLPNLKVYTAGSVLLLSIAVYHA 32
           G  ++ L  P ++V+  GS+ L  + + HA
Sbjct: 348 GADLETLNEPEIRVFNDGSLYLTKVQLIHA 377


>DQ325105-1|ABD14119.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 73  NLNATRNLNERMVVIITFMMQEPLCMWVVIKC 104
           N N   N N+++   I ++ Q P+ + V I C
Sbjct: 95  NYNNNNNYNKKLYYNINYIEQIPVPVPVPIYC 126


>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 2.7
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 73  NLNATRNLNERMVVIITFMMQEPLCMWVVIKC 104
           N N   N N+++   I ++ Q P+ + V I C
Sbjct: 333 NYNNNNNYNKKLYYNINYIEQIPVPVPVPIYC 364


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 10/32 (31%), Positives = 17/32 (53%)

Query: 73  NLNATRNLNERMVVIITFMMQEPLCMWVVIKC 104
           N N   N N+++   I ++ Q P+ + V I C
Sbjct: 95  NYNNDNNYNKKLYYNINYIEQIPVPVPVPIYC 126


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 3.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)

Query: 4   TLVDRLPLPNLKVYTAGSVLLLSIAVYHATIVTSD 38
           T +DR+ +P  +   AG   L     YH  IV  +
Sbjct: 922 TDIDRVLVPGSQQNVAGVFNLRPATTYHLRIVAEN 956


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 19.8 bits (39), Expect = 8.3
 Identities = 10/26 (38%), Positives = 15/26 (57%)

Query: 62  LVDQAEVMPALNLNATRNLNERMVVI 87
           LVD  E     N   TR+L++R+V +
Sbjct: 326 LVDMCEQDIIQNDRRTRHLSDRVVAL 351


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,622
Number of Sequences: 429
Number of extensions: 885
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of query: 114
length of database: 140,377
effective HSP length: 50
effective length of query: 64
effective length of database: 118,927
effective search space:  7611328
effective search space used:  7611328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.0 bits)
S2: 39 (19.8 bits)