GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000199-TA|BGIBMGA000199-PA|undefined
         (114 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g32410.1 68416.m04144 transcriptional repressor-related conta...    29   0.99 
At3g25750.1 68416.m03206 F-box family protein contains F-box dom...    29   0.99 
At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearl...    28   1.3  
At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type pept...    27   3.0  
At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type pept...    27   3.0  
At2g20300.1 68415.m02371 protein kinase family protein contains ...    27   3.0  
At5g48600.1 68418.m06011 structural maintenance of chromosomes (...    26   5.3  
At5g60300.2 68418.m07558 lectin protein kinase family protein co...    26   7.0  
At5g60300.1 68418.m07557 lectin protein kinase family protein co...    26   7.0  

>At3g32410.1 68416.m04144 transcriptional repressor-related contains
           weak similarity to Swiss-Prot:Q9Y4X4 krueppel-like
           factor 12 (Transcriptional repressor AP-2rep) (HSPC122)
           [Homo sapiens]
          Length = 232

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 15/61 (24%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 36  TSDPNWRANITLQRQEALAEPDGEAQLVDQAEVMPALNLNATRNLNERMVVIITFMMQEP 95
           TS P W+   T+   ++ A+P+   + VD++     L  +  RN++ +  +    M+Q P
Sbjct: 88  TSSPEWKEKDTMSSHKSYADPNSILKKVDESR---GLRFSVQRNVHSK--IFSPRMVQSP 142

Query: 96  L 96
           +
Sbjct: 143 V 143


>At3g25750.1 68416.m03206 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 348

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 13/32 (40%), Positives = 17/32 (53%)

Query: 74  LNATRNLNERMVVIITFMMQEPLCMWVVIKCL 105
           L+ TRN  +R V    + M E L  WV + CL
Sbjct: 244 LSITRNHIQRTVGFKVYKMDEDLAKWVEVSCL 275


>At1g55860.1 68414.m06406 ubiquitin-protein ligase 1 (UPL1) nearly
            identical to ubiquitin-protein ligase 1 [Arabidopsis
            thaliana] GI:7108521; E3, HECT-domain protein family;
            similar to GI:7108521, GB:AAF36454 from [Arabidopsis
            thaliana]
          Length = 3891

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 2/54 (3%)

Query: 35   VTSDPNWRANITLQRQEALAEPDGE--AQLVDQAEVMPALNLNATRNLNERMVV 86
            V + P+  A    Q Q  LA P  +   + + Q EVM  L LN+T N  +RM V
Sbjct: 2655 VNNPPDVMAESFAQGQANLASPVSQDTGESLQQLEVMQPLPLNSTPNEIDRMEV 2708


>At3g12340.2 68416.m01539 immunophilin, putative / FKBP-type
          peptidyl-prolyl cis-trans isomerase, putative contains
          Pfam profile: PF00254, FKBP-type peptidyl-prolyl
          cis-trans isomerases
          Length = 186

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 10 PLPNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPD 57
          P P+L+   AG    L I   HAT V S  + + +    + E+  +PD
Sbjct: 11 PFPSLRFIPAGKPNALRIFTVHATDVESTEDTQPDPETTQSESGTDPD 58


>At3g12340.1 68416.m01538 immunophilin, putative / FKBP-type
          peptidyl-prolyl cis-trans isomerase, putative contains
          Pfam profile: PF00254, FKBP-type peptidyl-prolyl
          cis-trans isomerases
          Length = 694

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 15/48 (31%), Positives = 23/48 (47%)

Query: 10 PLPNLKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPD 57
          P P+L+   AG    L I   HAT V S  + + +    + E+  +PD
Sbjct: 11 PFPSLRFIPAGKPNALRIFTVHATDVESTEDTQPDPETTQSESGTDPD 58


>At2g20300.1 68415.m02371 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 744

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 1/51 (1%)

Query: 16  VYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEALAEPDGEAQLVDQA 66
           VY+ G V+LL +      +  S P+   N+    +  LA  +G  QLVD A
Sbjct: 529 VYSYG-VVLLELLTGRRPVDMSQPSGEENLVTWARPLLANREGLEQLVDPA 578


>At5g48600.1 68418.m06011 structural maintenance of chromosomes
           (SMC) family protein similar to SP|P50532 Chromosome
           assembly protein XCAP-C {Xenopus laevis}; contains Pfam
           profiles PF02483: SMC family C-terminal domain, PF02463:
           RecF/RecN/SMC N terminal domain
          Length = 1241

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 16/58 (27%), Positives = 28/58 (48%), Gaps = 1/58 (1%)

Query: 14  LKVYTAGSVLLLSIAVYHATIVTSDPNWRANITLQRQEAL-AEPDGEAQLVDQAEVMP 70
           LK +T     L  I+        +  +W+A+I  ++QEA+ A    E  L +Q  ++P
Sbjct: 459 LKAFTDAQKQLSDISTRKKEKAAATTSWKADIKKKKQEAIEARKVEEESLKEQETLVP 516


>At5g60300.2 68418.m07558 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 9   LPLPNLKVYTAGSVLLLSIAVYHATIVTSDPNW 41
           LPLP+   YT G      + V  +++V S  +W
Sbjct: 616 LPLPDFSPYTLGIGTFAPVLVDASSLVVSSASW 648


>At5g60300.1 68418.m07557 lectin protein kinase family protein
           contains Pfam domains, PF00069: Protein kinase domain
           and PF00139: Legume lectins beta domain
          Length = 718

 Score = 25.8 bits (54), Expect = 7.0
 Identities = 11/33 (33%), Positives = 17/33 (51%)

Query: 9   LPLPNLKVYTAGSVLLLSIAVYHATIVTSDPNW 41
           LPLP+   YT G      + V  +++V S  +W
Sbjct: 616 LPLPDFSPYTLGIGTFAPVLVDASSLVVSSASW 648


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.134    0.407 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,395,640
Number of Sequences: 28952
Number of extensions: 73684
Number of successful extensions: 158
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 152
Number of HSP's gapped (non-prelim): 9
length of query: 114
length of database: 12,070,560
effective HSP length: 72
effective length of query: 42
effective length of database: 9,986,016
effective search space: 419412672
effective search space used: 419412672
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)