Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000198-TA|BGIBMGA000198-PA|IPR000719|Protein kinase,
IPR011009|Protein kinase-like, IPR002290|Serine/threonine protein
kinase
         (543 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                74   3e-15
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    68   2e-13
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    66   9e-13
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    57   4e-10
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    44   2e-06
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    44   2e-06
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    31   0.032
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    27   0.40 
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    26   0.91 
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    25   2.1  

>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 73.7 bits (173), Expect = 3e-15
 Identities = 64/225 (28%), Positives = 111/225 (49%), Gaps = 29/225 (12%)

Query: 18  LGKGATGAVFQGVNKNNGEPVAVKTFNQLSHMRPHDVQMREFEVLKKVKHENIVKLLAIE 77
           LG G  G V++ + K  GE VA K    +     +   +   +    +KH NIVK+L IE
Sbjct: 73  LGSGGFGIVYKALYK--GEQVAAK----IIQTEKYSNMLNSEKHASFLKHSNIVKVLMIE 126

Query: 78  EEQEGRGKVIVMELCTGGSLFNILDDPENTYGLQEYEFLLVLEHLTAGMKHLRDNNLVHR 137
             Q     +I MELC G +L N LD+      L + E + +L+ +T  ++   +  +VH 
Sbjct: 127 --QGASLSLITMELC-GTTLQNRLDEAI----LIKNERICILKSITCALQFCHNAGIVHA 179

Query: 138 DLKPGNIMKYINEDGTTTYKLTDFGAARELQEEEQFVSLYGTEEYLHPDMYERAVLRKPV 197
           D+KP NI+  ++++G    KLTDFG++  +    +    YGT  Y  P++ ++    +P 
Sbjct: 180 DVKPKNIL--MSKNGQP--KLTDFGSSVLIGAPNEIDKFYGTPGYTAPEVIKQ---NRPT 232

Query: 198 GKSFGATVDLWSIGVTLYHVATGQLPFRPYGGRRNKETMFYITTK 242
                   D++S+G+  + +   +LPF       +  T+ Y++ K
Sbjct: 233 -----PAADIYSLGIVAWQMLFRKLPF----AGLHSHTIIYLSAK 268


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 67.7 bits (158), Expect = 2e-13
 Identities = 56/213 (26%), Positives = 96/213 (45%), Gaps = 22/213 (10%)

Query: 16  SVLGKGATGAV-FQGVNKNNGEPVAVKTFN--QLSHMRPHDVQMREFEVLKKVKHENIVK 72
           + LG G  G V    +  ++    A+K     Q+   R     M E  ++ +   + +VK
Sbjct: 371 ATLGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVVK 430

Query: 73  LLAIEEEQEGRGKVIVMELCTGGSLFNILDDPEN-TYGLQEYEFLLVLEHLTAGMKHLRD 131
           L    +++  +   ++ME C GG L+ +L D  +   G   +    V+E       +L  
Sbjct: 431 LFKTFKDR--KYLYMLMEACLGGELWTVLRDKGHFDDGTTRFYTACVVE----AFDYLHS 484

Query: 132 NNLVHRDLKPGNIMKYINEDGTTTYKLTDFGAARELQEEEQFVSLYGTEEYLHPDMYERA 191
            N+++RDLKP N++     D     KL DFG A+ L    +  +  GT EY+ P++    
Sbjct: 485 RNIIYRDLKPENLLL----DSQGYVKLVDFGFAKRLDHGRKTWTFCGTPEYVAPEVI--- 537

Query: 192 VLRKPVGKSFGATVDLWSIGVTLYHVATGQLPF 224
                + K    + D WS+GV ++ + TG  PF
Sbjct: 538 -----LNKGHDISADYWSLGVLMFELLTGTPPF 565


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 65.7 bits (153), Expect = 9e-13
 Identities = 40/107 (37%), Positives = 56/107 (52%), Gaps = 10/107 (9%)

Query: 119 LEHLTAGMKHLRDNNLVHRDLKPGNIMKYINEDGTTTYKLTDFGAARELQEEEQ-FVSLY 177
           ++ +   + H   N +VHRDLKP N++      G    KL DFG A E+Q E Q +    
Sbjct: 15  IQQILESVHHCHHNGVVHRDLKPENLLLASKAKGAAV-KLADFGLAIEVQGEAQAWFGFA 73

Query: 178 GTEEYLHPDMYERAVLRKPVGKSFGATVDLWSIGVTLYHVATGQLPF 224
           GT  YL P+     VL+K   + +G  VD+W+ GV LY +  G  PF
Sbjct: 74  GTPGYLSPE-----VLKK---EPYGKPVDIWACGVILYILLVGYPPF 112


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 56.8 bits (131), Expect = 4e-10
 Identities = 54/216 (25%), Positives = 101/216 (46%), Gaps = 20/216 (9%)

Query: 16  SVLGKGATGAVFQGVNK--NNGEP---VAVKTFNQLSHMRPHDVQMREFEVLKKVKHENI 70
           +++G G  G V +G  K   +G     VA+KT    S  +  +  + E  ++ + +H N+
Sbjct: 637 AIIGGGEFGDVCRGKLKLPPDGRTEIDVAIKTLKPGSADKARNDFLTEASIMGQFEHPNV 696

Query: 71  VKLLAIEEEQEGRGKVIVMELCTGGSLFNILDDPENTYGLQEYEFLLVLEHLTAGMKHLR 130
           + L  +  +      +I+ E    GSL   L   +  +  Q  + + +L  + +GM++L 
Sbjct: 697 IFLQGVVTKSNP--VMIITEFMENGSLDTFLRANDGKF--QVLQLVGMLRGIASGMQYLA 752

Query: 131 DNNLVHRDLKPGNIMKYINEDGTTTYKLTDFGAARELQE-EEQFVSLYGTEEYLHPDMYE 189
           + N VHRDL   N++  +N       K+ DFG +RE++   E   +  G +  +     E
Sbjct: 753 EMNYVHRDLAARNVL--VN--AALVCKIADFGLSREIESATEGAYTTRGGKIPVRWTAPE 808

Query: 190 RAVLRKPVGKSFGATVDLWSIGVTLYHVAT-GQLPF 224
               RK     F +  D+WS+G+  + V + G+ P+
Sbjct: 809 AIAFRK-----FTSASDVWSMGIVCWEVMSYGERPY 839


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 35/242 (14%)

Query: 18  LGKGATGAVF--QGVNKNNGEPVAVKTFNQLSHMRPHDVQMREFEVLKKVKHENIVKLL- 74
           +G+G  G VF   G     G P A+K+         +D+ M  +       H+ IVKL  
Sbjct: 600 IGRGQYGIVFACDGWGGKAG-PCAIKSVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLRG 658

Query: 75  AIEEEQEGRGKVIVMELCTGGSLFNILDD-PENTY-----GLQEYEFLLVLEHLTAGMKH 128
           +I +   G G         G ++  I D    + Y     GL   E + +   +  G+++
Sbjct: 659 SIIDHSYGGG------FGFGSAVLLISDRLSRDLYCGIRAGLSWLERIQIALDVLEGIRY 712

Query: 129 LRDNNLVHRDLKPGNIMKYINEDGTTTYKLTDFGAARELQEEEQFVSLYGTEEYLHPDMY 188
           L    LVHRD+K  N++  I        KLTDFG    + E     S+ GT  ++ P++ 
Sbjct: 713 LHSQGLVHRDVKLKNVLLDIENRA----KLTDFGFC--ITEVMMLGSIVGTPVHMAPEL- 765

Query: 189 ERAVLRKPVGKSFGATVDLWSIGVTLYHVATG--QLPFRPYGGRRNKETMFYITTKKASG 246
                   +   + ++VD+++ G+  +++  G  +LP+  +    NKE + + + KKA  
Sbjct: 766 --------LSGHYDSSVDVYAFGILFWYLCAGHVRLPY-TFEQFHNKE-LLWTSVKKALM 815

Query: 247 VI 248
           ++
Sbjct: 816 IV 817


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 44.4 bits (100), Expect = 2e-06
 Identities = 60/242 (24%), Positives = 107/242 (44%), Gaps = 35/242 (14%)

Query: 18  LGKGATGAVF--QGVNKNNGEPVAVKTFNQLSHMRPHDVQMREFEVLKKVKHENIVKLL- 74
           +G+G  G VF   G     G P A+K+         +D+ M  +       H+ IVKL  
Sbjct: 638 IGRGQYGIVFACDGWGGKAG-PCAIKSVVPSDESHWNDLAMEFYYNRSIPDHKRIVKLRG 696

Query: 75  AIEEEQEGRGKVIVMELCTGGSLFNILDD-PENTY-----GLQEYEFLLVLEHLTAGMKH 128
           +I +   G G         G ++  I D    + Y     GL   E + +   +  G+++
Sbjct: 697 SIIDHSYGGG------FGFGSAVLLISDRLSRDLYCGIRAGLSWLERIQIALDVLEGIRY 750

Query: 129 LRDNNLVHRDLKPGNIMKYINEDGTTTYKLTDFGAARELQEEEQFVSLYGTEEYLHPDMY 188
           L    LVHRD+K  N++  I        KLTDFG    + E     S+ GT  ++ P++ 
Sbjct: 751 LHSQGLVHRDVKLKNVLLDIENRA----KLTDFGFC--ITEVMMLGSIVGTPVHMAPEL- 803

Query: 189 ERAVLRKPVGKSFGATVDLWSIGVTLYHVATG--QLPFRPYGGRRNKETMFYITTKKASG 246
                   +   + ++VD+++ G+  +++  G  +LP+  +    NKE + + + KKA  
Sbjct: 804 --------LSGHYDSSVDVYAFGILFWYLCAGHVRLPY-TFEQFHNKE-LLWTSVKKALM 853

Query: 247 VI 248
           ++
Sbjct: 854 IV 855


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 30.7 bits (66), Expect = 0.032
 Identities = 22/79 (27%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 88  VMELCTGGSLFNILDDPENTYGLQEYEFLLVLEHLTAGMKHLRDNNLVHRDLKPGNIMKY 147
           VME   GG L   +   +     +E   +     +  G+  L    +V+RDLK  N++  
Sbjct: 63  VMEYVNGGDLMYQI---QQCGKFKEPVAVFYASEIAIGLFFLHGRGIVYRDLKLDNVL-- 117

Query: 148 INEDGTTTYKLTDFGAARE 166
           +++DG    K+ DFG  +E
Sbjct: 118 LDQDG--HIKIADFGMCKE 134


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 27.1 bits (57), Expect = 0.40
 Identities = 13/33 (39%), Positives = 18/33 (54%)

Query: 376 DTSADEPLLLFNKNNNNVSMPAEPDPPKFPVFP 408
           + S  EPL +F ++  N  MP+EP  P   V P
Sbjct: 941 EISDGEPLYVFVRSAPNFYMPSEPKAPMILVGP 973


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
           releasing hormone-binding protein protein.
          Length = 332

 Score = 25.8 bits (54), Expect = 0.91
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 245 SGVISGTQTTENGPIDWARELPPHCQLSVG 274
           S  +S T+T E G I    E  PH Q+ +G
Sbjct: 237 SNFLSSTRTAETGTIRKCDESSPHDQVIIG 266


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 24.6 bits (51), Expect = 2.1
 Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)

Query: 5   RGSENYVWSTTSVLGKGATGAVFQGVNKNNGEPVAVKTFNQLSHMRPHDVQMREFEVLKK 64
           +G EN +W+  S  G    G +F G+  +    +A    N+L   R  +V  +  E L+ 
Sbjct: 294 QGKENILWTQASAKGISDNGVLFFGLVGDTS--LACWNENRLLDRRNIEVVAKNKETLQA 351

Query: 65  V 65
           +
Sbjct: 352 I 352


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,645
Number of Sequences: 429
Number of extensions: 6966
Number of successful extensions: 32
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 14
Number of HSP's gapped (non-prelim): 11
length of query: 543
length of database: 140,377
effective HSP length: 61
effective length of query: 482
effective length of database: 114,208
effective search space: 55048256
effective search space used: 55048256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 46 (22.6 bits)