GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000198-TA|BGIBMGA000198-PA|IPR000719|Protein kinase,
IPR011009|Protein kinase-like, IPR002290|Serine/threonine protein
kinase
         (543 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosin...    51   2e-08
AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain tran...    25   1.8  
AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.          25   1.8  
AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    23   5.4  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   7.1  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    23   7.1  

>AY618898-1|AAU87291.1|  803|Tribolium castaneum receptor tyrosine
           kinase Torso-likeprotein protein.
          Length = 803

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 11/135 (8%)

Query: 105 ENTYGLQEYEFLLVLEHLTAGMKHLRDNNLVHRDLKPGNIMKYINEDGTTTYKLTDFGAA 164
           EN + +Q    L +   +  GM+HL    +VHRDL   N++   N     T K++DFG +
Sbjct: 584 ENDFIIQPKHLLSIARQVALGMEHLAKTRVVHRDLAARNVLVCENH----TVKVSDFGLS 639

Query: 165 RELQEEEQFVSLYGTEEYLHPDMYERAVLRKPVGKSFGATVDLWSIGVTLYHVATGQLPF 224
           R++ ++  +    G +    P  +    L     + +    D+WS GV L+ + T  L  
Sbjct: 640 RDVYQDNVYCKNGGGK---LPVRW--MALESLTHQRYTTYSDVWSFGVLLWEIVT--LGG 692

Query: 225 RPYGGRRNKETMFYI 239
            PY G  + E + ++
Sbjct: 693 TPYVGVHSSELLDFL 707


>AF452568-1|AAL57830.1|  243|Tribolium castaneum homeodomain
           transcription factor Zen2 protein.
          Length = 243

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 380 DEPLLLFNKNNNNVSMPAEPDPPKFPVFPNMVSVENDASQAKVS-SGAKTARPALDRSMS 438
           DE   L  K ++N  + ++      P +  + + + +  Q +VS S  ++  P ++R   
Sbjct: 22  DENQALGFKISDNSGINSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSHEPEMERPKG 81

Query: 439 SRRYKVAQTVYLQTQILDKDVSAAEIKLVALTERLQDAE 477
           +   K A+T Y  +Q+++ +      K +    R+Q A+
Sbjct: 82  ASNGKRARTAYTSSQLVELEREFHRSKYLCRPRRIQMAQ 120


>AF321227-5|AAK16425.1|  292|Tribolium castaneum Zen2 protein.
          Length = 292

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 21/99 (21%), Positives = 46/99 (46%), Gaps = 1/99 (1%)

Query: 380 DEPLLLFNKNNNNVSMPAEPDPPKFPVFPNMVSVENDASQAKVS-SGAKTARPALDRSMS 438
           DE   L  K ++N  + ++      P +  + + + +  Q +VS S  ++  P ++R   
Sbjct: 42  DENQALGFKISDNSGINSQMIDYSRPNWSYLRTPQFEPQQFEVSLSENRSHEPEMERPKG 101

Query: 439 SRRYKVAQTVYLQTQILDKDVSAAEIKLVALTERLQDAE 477
           +   K A+T Y  +Q+++ +      K +    R+Q A+
Sbjct: 102 ASNGKRARTAYTSSQLVELEREFHRSKYLCRPRRIQMAQ 140


>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 369 TPGKSYPDTSADEPLLLFNKNNNNVSMP 396
           +PG  + +   DEP  L NK +N++++P
Sbjct: 17  SPGGDHSENMQDEPENLSNK-SNSITVP 43


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 94   GGSLFNI-LDDPENTYGLQEYEFLLVLEHLTAG 125
            GG ++ + LDD +N  G +EY  L  +  +  G
Sbjct: 2159 GGMIWALDLDDFKNLCGCEEYPLLRTINRVLRG 2191


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 11/33 (33%), Positives = 15/33 (45%)

Query: 226 PYGGRRNKETMFYITTKKASGVISGTQTTENGP 258
           P GGRR       +TT +     + + TT  GP
Sbjct: 37  PQGGRRRAARPGVVTTPRWGCARASSATTMGGP 69


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.315    0.132    0.379 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 123,098
Number of Sequences: 317
Number of extensions: 5192
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 6
length of query: 543
length of database: 114,650
effective HSP length: 60
effective length of query: 483
effective length of database: 95,630
effective search space: 46189290
effective search space used: 46189290
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)