Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000197-TA|BGIBMGA000197-PA|IPR003754|Uroporphyrinogen
III synthase HEM4
(248 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase Ups1|Schizos... 57 2e-09
SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces pom... 31 0.16
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 31 0.21
SPBC25H2.03 |||vacuolar protein involved in phosphoinositide met... 30 0.27
SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like |Schiz... 27 1.9
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb... 27 2.6
SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor Vma6|S... 27 2.6
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te... 27 3.4
SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces pom... 26 4.5
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 26 4.5
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 4.5
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 26 5.9
SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|ch... 26 5.9
SPAC1705.03c ||SPAC23H4.19|conserved fungal family|Schizosacchar... 25 7.8
SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces p... 25 7.8
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 7.8
SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||... 25 7.8
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p... 25 7.8
>SPAC31G5.08 |ups1|ups|uroporphyrinogen-III synthase
Ups1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 251
Score = 57.2 bits (132), Expect = 2e-09
Identities = 58/241 (24%), Positives = 104/241 (43%), Gaps = 19/241 (7%)
Query: 11 EDYQRIFRENNFETIFVEPLQFIYINIEELSQKL--LQNDYDGMILTSPRAVEAVSKCW- 67
+ Y F + +T F+ L+ ++ E+L KL ++ Y G+I+TS R E + +
Sbjct: 15 DPYVEAFEKYGRDTAFIPVLRHKRVHEEQLRDKLKNVRKTYCGLIVTSQRVSETLDEALK 74
Query: 68 --DPT-KFVIWNSKDVYTVGEMSSQKIKXXXXXXXXXXXXXNAENLSKIILK---DKKKT 121
D T + I ++TVG + I+ E L+ +I + K+
Sbjct: 75 QEDETERQKILMETPIFTVGPATDDSIRRLGFQQTHGKDCGRGEVLADLIEEWYTTTKQH 134
Query: 122 STFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLMELNNLNDSPSGLAFF 181
LF G + I L + + D++ VY TQE EN + + + + + + F
Sbjct: 135 KPLLFLVGEKHRDIIQRKLGDDRV--DSLIVYATQELENTETQIKDTIRKHPTIDWIVAF 192
Query: 182 SPSGCEYIHRQLQTFSNRLSLLPHFAIGNSTAHKIENLGVEIAGVAAKPKAESLVESVLK 241
SP+ I L TF +++ IG +T ++ LG + V+ P ESL S++
Sbjct: 193 SPTS---ICSLLNTFELKIA-----TIGPTTGDYLKKLGTQPNVVSPAPNPESLASSIVA 244
Query: 242 Y 242
+
Sbjct: 245 F 245
>SPBC119.17 ||SPBC577.01|metallopeptidase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 992
Score = 31.1 bits (67), Expect = 0.16
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
Query: 189 IHRQLQTFSNRLSLLPHFAIGNSTAHKIENLGVEIAGVAAKPKAESLVESVLKYF 243
+ Q++ ++ +S+ P NS K E LG+ I+G A LVE + K F
Sbjct: 617 LEHQIRRYTGGISISPSAVTNNSDVSKYE-LGIAISGYALDKNVGKLVELINKAF 670
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 204 PHFAIGNSTAHKIENLGVEIAGVAAKPKAESLVESVLKYFALQG 247
P+ ++T I ++G+E A + K E+LV S+ AL+G
Sbjct: 361 PNSGYDSTTKRGIFSVGLEGASEESLAKIENLVYSIFNDLALKG 404
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 30.7 bits (66), Expect = 0.21
Identities = 18/61 (29%), Positives = 30/61 (49%)
Query: 173 DSPSGLAFFSPSGCEYIHRQLQTFSNRLSLLPHFAIGNSTAHKIENLGVEIAGVAAKPKA 232
D PS L F+ S +Y+ + ++ + L + + ST KIENL ++ G K +
Sbjct: 1592 DEPSSLISFTLSSPDYLSKMVEIEDSMDEALTNQGLQGSTQFKIENLMLKPTGTHLKYQF 1651
Query: 233 E 233
E
Sbjct: 1652 E 1652
>SPBC25H2.03 |||vacuolar protein involved in phosphoinositide
metabolism|Schizosaccharomyces pombe|chr 2|||Manual
Length = 811
Score = 30.3 bits (65), Expect = 0.27
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 108 ENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLME 167
++L ++ +D+K FL GNL + N ++ E + + ET+EN L ++++E
Sbjct: 518 KSLLQMFAEDRK----FLNSRGNLIIRQLCNYIEGERVYTSFAGILETEENLELASIMVE 573
Query: 168 L--NNLNDSP 175
+ NNL +P
Sbjct: 574 VLNNNLFTAP 583
>SPAC3H1.03 |mug151||transcriptional regulator, HCNGP-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 146
Score = 27.5 bits (58), Expect = 1.9
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 4/47 (8%)
Query: 43 KLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTVGEMSSQ 89
KLL N D + + PR WDPT F K+VY SQ
Sbjct: 77 KLLDNLQDFLDIKEPRGTMISKDMWDPTDF----HKNVYASALSKSQ 119
>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1066
Score = 27.1 bits (57), Expect = 2.6
Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 117 DKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENE-NLKALLMELNNLNDSP 175
D T + L + +T+ N+LQ + VYE Q+ + NL + +M L ++S
Sbjct: 849 DLSSTKSLLRSLSLIEDDTVRNILQLYYYKVTPRAVYEMQKYKGNLASQMMSLGIEDESD 908
Query: 176 SGLAFFSP---SGCEYIHRQLQ 194
F +P G +H QLQ
Sbjct: 909 DLTHFTAPLERYGDIVVHYQLQ 930
>SPAC23H4.14 |vam6|vps39|guanyl-nucleotide exchange factor
Vma6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 905
Score = 27.1 bits (57), Expect = 2.6
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Query: 150 ITVYETQENENLKALLMELNNLNDSPSGLAFFSPS 184
+ +YE Q+N K L + +LND P LA+ SP+
Sbjct: 126 LEIYEIQKNS--KPNLTKTISLNDRPRSLAWVSPT 158
>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
termination factor Reb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 504
Score = 26.6 bits (56), Expect = 3.4
Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
Query: 156 QENENLKALLMELNNLNDSPSGLAFFSPSGCEYIHRQLQTFSNRLSLLPHFAIGNSTAHK 215
Q N+++ E+ N++ G A ++ +Y+ R++Q F S L H + +S K
Sbjct: 131 QTNDSILISPSEITNMDPFLKGSARWTAEHWDYLERRMQNFCQTYS-LDHTQVADSLHEK 189
>SPAC1565.04c |ste4||adaptor protein Ste4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 264
Score = 26.2 bits (55), Expect = 4.5
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 9 ESEDYQRIFRENNFETIFVEPLQFIYINIEELSQKLLQNDYDGMILTSP 57
E+E+ + + N+ + F++ L+ I IN++E Q +N D +T P
Sbjct: 119 ETENTKLVKTLNSLNSEFLQLLRKIAINVKEGRQLTTENSSDTSSMTHP 167
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 26.2 bits (55), Expect = 4.5
Identities = 22/103 (21%), Positives = 43/103 (41%), Gaps = 6/103 (5%)
Query: 83 VGEMSSQKIKXXXXXXXXXXXXXNAENLSKIILKDKKKTSTFLFPCGNLRSETIP-NMLQ 141
V + K+K +A+N SK+IL +K T L+ + ++P + +
Sbjct: 138 VSDSIPSKVKILTSEAKTQKFIQDAQNSSKVILISQKMKPTLLYKSLSNEFSSLPFSFMP 197
Query: 142 SEGITLDAITVYETQENENLKALLMELNNLNDSPSGLAFFSPS 184
++ D + + +L L ++ N +G +FFS S
Sbjct: 198 AKANVNDLFNISAYVDTSDLPILFIKHPN-----NGTSFFSNS 235
>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 4.5
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Query: 128 CGNLRSETIPNMLQSEGITLDAITVYETQENENLKALL 165
C NL ET+ + + L A+ YE Q+ NLK LL
Sbjct: 153 CVNLPPETL--FYDMQRLWLTAMNTYENQKPPNLKLLL 188
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 25.8 bits (54), Expect = 5.9
Identities = 34/152 (22%), Positives = 62/152 (40%), Gaps = 16/152 (10%)
Query: 81 YTVGEMSSQKIKXXXXXXXXXXXXXNAENLSKI-ILKDKKKTSTFLFPCGNLRSETIP-- 137
+ + E++ QK++ NAE L K+ I+ +K+ + LF +E
Sbjct: 694 HKIAEITFQKLRYFEKLSFLYLITGNAEKLQKMAIIAEKRNDTLSLFQNSLYLNEVESRI 753
Query: 138 NMLQSEGI-TLDAITVYETQENENLKALLMELNNLNDS---PS-GLAFFSPSGCEYIHRQ 192
N+L+ G+ + +T E + +L N + PS G AF +P
Sbjct: 754 NILEQAGMYPIAYLTAKSNGLEEKAQQILSHCNKTEEEIKLPSLGSAFTTPVPVN----- 808
Query: 193 LQTFSNRLSLL--PHFAIGNSTAHKIENLGVE 222
+T+++ LL H S ++E L +E
Sbjct: 809 -ETYTHNWPLLDTSHSTFEKSLQERMEQLAIE 839
>SPAC2G11.05c |||BRO1 domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 701
Score = 25.8 bits (54), Expect = 5.9
Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 1/95 (1%)
Query: 42 QKLLQNDYDGMILTSPRA-VEAVSKCWDPTKFVIWNSKDVYTVGEMSSQKIKXXXXXXXX 100
+KL NDY + + S + ++ KC+ WN + E+ Q ++
Sbjct: 550 KKLGSNDYFNISMYSNHTDIHSLLKCFREAVDAKWNFRRQRERQEIIIQNVEKLKSYLNS 609
Query: 101 XXXXXNAENLSKIILKDKKKTSTFLFPCGNLRSET 135
+SKI+ ++ + F +R+ET
Sbjct: 610 FKVQAECSEISKILSFSQETEKKYKFLLQTVRNET 644
>SPAC1705.03c ||SPAC23H4.19|conserved fungal
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 7.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 143 EGITLDAITVYETQENENLKALLME 167
+GI+LD++T ++ N ++ + ME
Sbjct: 153 DGISLDSVTTFQVTNNRYIQEITME 177
>SPAC18B11.02c |||pseudouridylate synthase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/34 (44%), Positives = 17/34 (50%)
Query: 151 TVYETQENENLKALLMELNNLNDSPSGLAFFSPS 184
TV EN +LL N L+ SGL FFS S
Sbjct: 135 TVLHILMKENKCSLLYPCNRLDRLTSGLMFFSKS 168
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 7.8
Identities = 14/46 (30%), Positives = 22/46 (47%)
Query: 36 NIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVY 81
NI +K+LQN Y+ + S V+ VSK + + S D +
Sbjct: 64 NIRNNLEKVLQNSYEFQSMVSLPKVDRVSKFLSDNESISQTSGDYF 109
>SPAC29A4.19c |||P-type ATPase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1096
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 108 ENLSKIILKDKKKTSTFLFPCGNLR 132
E +S I LK+ +TS+F+ P G R
Sbjct: 101 EKVSSICLKNDIQTSSFVLPSGKTR 125
>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.4 bits (53), Expect = 7.8
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 12 DYQRIFRENNFETIFVEPLQFIYINIEELSQKLLQNDYDGMIL 54
DY RE NF +EP+Q Y + E+ +KL +G+I+
Sbjct: 270 DYSLFNREFNFFGNKIEPIQASYDHAVEVYKKLTGWLQEGVII 312
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.316 0.133 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,051,513
Number of Sequences: 5004
Number of extensions: 41440
Number of successful extensions: 119
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 20
length of query: 248
length of database: 2,362,478
effective HSP length: 71
effective length of query: 177
effective length of database: 2,007,194
effective search space: 355273338
effective search space used: 355273338
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
- SilkBase 1999-2023 -