Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000197-TA|BGIBMGA000197-PA|IPR003754|Uroporphyrinogen
III synthase HEM4
         (248 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g26540.1 68415.m03184 uroporphyrinogen-III synthase family pr...    31   0.73 
At1g72140.1 68414.m08341 proton-dependent oligopeptide transport...    31   0.97 
At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putativ...    28   5.1  
At1g17930.1 68414.m02219 expressed protein similar to hypothetic...    28   5.1  
At1g80880.1 68414.m09490 pentatricopeptide (PPR) repeat-containi...    27   9.0  
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /...    27   9.0  

>At2g26540.1 68415.m03184 uroporphyrinogen-III synthase family
           protein contains Pfam PF02602: uroporphyrinogen-III
           synthase; weak similarity to Porphyrin biosynthesis
           protein HEMD)) (Uroporphyrinogen III methylase) (UROM);
           Uroporphyrinogen-III synthase (EC 4.2.1.75)
           (Swiss-Prot:Q59294) [Clostridium josui]
          Length = 321

 Score = 31.1 bits (67), Expect = 0.73
 Identities = 45/213 (21%), Positives = 79/213 (37%), Gaps = 16/213 (7%)

Query: 36  NIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTVG----EMSSQKI 91
           + + L+  L    +D +I+TSP A     + W   K        +  VG     +  + +
Sbjct: 103 DFDRLASVLNDKSFDWIIITSPEAGSVFLEAW---KTASSPEVQIGVVGAGTARVFEEAM 159

Query: 92  KXXXXXXXXXXXXXNAEN--LSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDA 149
           K              A    L+  + +   K S+ L+P        I   L   G  +  
Sbjct: 160 KSADGLLHVAFTPSKATGKVLASELPEKVGKRSSVLYPASLKAGNDIVEGLSKRGFEVVR 219

Query: 150 ITVYETQENENLKALLMELNNLNDSPSGLAFFSPSGCEYIHRQLQTFSNRLSLLPHFA-I 208
           +  Y T   +++  +L++      +P  L+  SPS    +   L    N      + A I
Sbjct: 220 LNTYTTVPVQSVDTVLLQ--QALSAPV-LSVASPSA---VRAWLHLIQNEEQWSNYVACI 273

Query: 209 GNSTAHKIENLGVEIAGVAAKPKAESLVESVLK 241
           G +TA     LG++      KP  E  VES+++
Sbjct: 274 GETTASAARRLGLKNVYYPEKPGLEGWVESIME 306


>At1g72140.1 68414.m08341 proton-dependent oligopeptide transport
           (POT) family protein contains Pfam profile: PF00854 POT
           family
          Length = 555

 Score = 30.7 bits (66), Expect = 0.97
 Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 2/59 (3%)

Query: 25  IFVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTV 83
           IF+  +  +   + E+  K L+   D  ++ SP+A   +S CW   +++++   DV+T+
Sbjct: 405 IFLSIISMVIAALVEM--KRLKTARDHGLVDSPKATVPMSVCWLIPQYILFGVSDVFTM 461


>At4g38880.1 68417.m05506 amidophosphoribosyltransferase, putative /
           glutamine phosphoribosylpyrophosphate amidotransferase,
           putative / phosphoribosyldiphosphate 5-amidotransferase,
           putative similar to amidophosphoribosyltransferase
           [Arabidopsis thaliana] GI:469195; contains Pfam profiles
           PF00156: Phosphoribosyl transferase domain, PF00310:
           Glutamine amidotransferases class-II
          Length = 532

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 170 NLNDSPSGLAFFSPSGCEYIHRQLQTFSNRLSLLPHFAIGN--STAHKIENLGVE--IAG 225
           N++ +    +FF PS   Y  + L + S R SL P F+ G   +   + + L  E  + G
Sbjct: 22  NVSQNTISPSFFKPSLKPYASKTLISLSCRRSLSPVFSAGTYVTNVDEDDKLHEECGVVG 81

Query: 226 VAAKPKAESLVESVLKYFALQ 246
           +   P+A  L  S L   ALQ
Sbjct: 82  IHGDPEASRL--SYLALHALQ 100


>At1g17930.1 68414.m02219 expressed protein similar to hypothetical
           protein GI:4559351 from [Arabidopsis thaliana]
          Length = 478

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/54 (25%), Positives = 30/54 (55%), Gaps = 1/54 (1%)

Query: 106 NAENLSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENE 159
           N   +S ++ + +++T+TF FPCG + + T+  +    G+ +D   V   +E +
Sbjct: 63  NNSLISALVERWRRETNTFHFPCGEM-TITLDEVSLILGLAVDGKPVVGVKEKD 115


>At1g80880.1 68414.m09490 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 17/57 (29%), Positives = 26/57 (45%)

Query: 190 HRQLQTFSNRLSLLPHFAIGNSTAHKIENLGVEIAGVAAKPKAESLVESVLKYFALQ 246
           HR     S  LS LPHFA  N  + K  +   +I   A  P  + L++ + +   L+
Sbjct: 49  HRAGHVHSQVLSYLPHFASSNRFSTKTISETFDINLTALAPLEKGLIDLIRQVSELE 105


>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
           CAF identical to RNA helicase/RNAseIII CAF protein
           GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
          Length = 1909

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 203 LPHFAIGNSTAHKIENLGVEIAGVAAKPKAESLVESVLKY 242
           LP   + +   H  E +G  +A     PK +SL++ +LKY
Sbjct: 620 LPDDPVVSGGEHVDEVIGAAVADGKVTPKVQSLIKLLLKY 659


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,159,172
Number of Sequences: 28952
Number of extensions: 192595
Number of successful extensions: 481
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 7
length of query: 248
length of database: 12,070,560
effective HSP length: 79
effective length of query: 169
effective length of database: 9,783,352
effective search space: 1653386488
effective search space used: 1653386488
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)