Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000197-TA|BGIBMGA000197-PA|IPR003754|Uroporphyrinogen
III synthase HEM4
(248 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0223 + 1901898-1901983,1902079-1902154,1902256-1902308,190... 33 0.22
11_04_0297 + 16050333-16050348,16050564-16052518 32 0.50
01_06_0150 + 27025208-27025663 31 0.87
03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962 29 4.7
11_04_0236 + 15215386-15216197,15216854-15218888,15219131-152200... 28 6.2
10_08_0978 + 21994359-21996961,21997089-21998229 28 6.2
07_01_1027 - 8873582-8876275 28 6.2
06_01_0832 - 6269249-6271794,6272083-6272176 28 6.2
04_04_0955 + 29640612-29643305 28 6.2
03_01_0610 + 4478521-4478715,4480003-4480090,4480255-4480321,448... 28 6.2
01_05_0251 + 19952882-19955459,19956209-19956245,19956370-199565... 28 6.2
>01_01_0223 +
1901898-1901983,1902079-1902154,1902256-1902308,
1902400-1902887,1902983-1903143,1903234-1903531,
1903619-1903773
Length = 438
Score = 33.1 bits (72), Expect = 0.22
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 23 ETIFVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIW 75
E + V+ +Q +++ +E L ++++Q + ++ SPR +E +S P + +W
Sbjct: 33 EALMVKQMQTLFVALEPLLRRVVQEELQAGLVRSPRYIERMSPETPPAQPPMW 85
>11_04_0297 + 16050333-16050348,16050564-16052518
Length = 656
Score = 31.9 bits (69), Expect = 0.50
Identities = 17/48 (35%), Positives = 29/48 (60%)
Query: 19 ENNFETIFVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKC 66
E+N F+E L+++ N E++++ +L N ILTSPR + V +C
Sbjct: 82 ESNNRGNFLELLKWLAGNNEDVNKVVLNNAPGNCILTSPRIQKQVIRC 129
>01_06_0150 + 27025208-27025663
Length = 151
Score = 31.1 bits (67), Expect = 0.87
Identities = 15/45 (33%), Positives = 28/45 (62%)
Query: 176 SGLAFFSPSGCEYIHRQLQTFSNRLSLLPHFAIGNSTAHKIENLG 220
S +FFS S C +I+ +L+T ++R ++P +G+ + E+LG
Sbjct: 10 SFFSFFSLSLCIFINEKLRTGASRSMVVPKKTVGDELRGRREDLG 54
>03_01_0175 - 1413599-1413934,1414326-1414526,1414660-1414962
Length = 279
Score = 28.7 bits (61), Expect = 4.7
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 4/75 (5%)
Query: 174 SPSGLAFFSPSGCEYIHRQLQTFSNRLSLLPHFAIGNSTAH---KIENLGVEIAGVAAKP 230
SPSG+ P+ + +HR + ++ L G + H K+E + V G+ A+
Sbjct: 60 SPSGIVLVDPTEAQKVHRLKAVYDQKVVPLITEEFGYTNVHQVPKVEKIVVN-CGLGAEA 118
Query: 231 KAESLVESVLKYFAL 245
+ES +K A+
Sbjct: 119 GNSKGLESAMKDLAM 133
>11_04_0236 + 15215386-15216197,15216854-15218888,15219131-15220017,
15222420-15226194
Length = 2502
Score = 28.3 bits (60), Expect = 6.2
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 5/83 (6%)
Query: 109 NLSKIILKDKKKTSTFLFP----CGNLRSETIPNMLQSEGITLDAITVYETQENENLKAL 164
NL+ + + T L P CGNLR+ + + + +G++ A T + Q+ + L
Sbjct: 2218 NLTSLNISSATLTGQQLAPIIRSCGNLRTFCVRDSIGDDGLSAIAETCLDLQDLRVYRLL 2277
Query: 165 LMELNNLNDSPSGLAFFSPSGCE 187
++L+ S GL S GC+
Sbjct: 2278 RGSEHHLSVSDVGLETIS-KGCQ 2299
>10_08_0978 + 21994359-21996961,21997089-21998229
Length = 1247
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 26 FVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCW--DPTKFVIWNSKDVY 81
F+E L + N EE+ + +L N LT+P + ++ C + TK ++ + D Y
Sbjct: 320 FLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEY 377
>07_01_1027 - 8873582-8876275
Length = 897
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 26 FVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCW--DPTKFVIWNSKDVY 81
F+E L + N EE+ + +L N LT+P + ++ C + TK ++ + D Y
Sbjct: 320 FLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEY 377
>06_01_0832 - 6269249-6271794,6272083-6272176
Length = 879
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 26 FVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCW--DPTKFVIWNSKDVY 81
F+E L + N EE+ + +L N LT+P + ++ C + TK ++ + D Y
Sbjct: 302 FLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEY 359
>04_04_0955 + 29640612-29643305
Length = 897
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 26 FVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCW--DPTKFVIWNSKDVY 81
F+E L + N EE+ + +L N LT+P + ++ C + TK ++ + D Y
Sbjct: 320 FLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEY 377
>03_01_0610 +
4478521-4478715,4480003-4480090,4480255-4480321,
4480561-4480679,4480809-4480904,4481019-4481074,
4481400-4481485,4481914-4482048,4482216-4482300
Length = 308
Score = 28.3 bits (60), Expect = 6.2
Identities = 30/141 (21%), Positives = 56/141 (39%), Gaps = 11/141 (7%)
Query: 110 LSKIILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLMELN 169
L+ + + + T L+P I N L + G + + Y T +++ L+ L
Sbjct: 162 LASELPRTTETTCKVLYPASAKAGHEIQNGLSNRGFEVTRLNTYTTVSVQDVDPLI--LK 219
Query: 170 NLNDSPSGLAFFSPSGCE---YIHRQLQTFSNRLSLLPHFAIGNSTAHKIENLGVEIAGV 226
+P +A SPS + Q+ + N ++ IG +TA + G++
Sbjct: 220 PALSAPV-VAVASPSALRAWLNLASQVDNWGNAIA-----CIGETTASAAKKFGLKSIYY 273
Query: 227 AAKPKAESLVESVLKYFALQG 247
P + VES+L+ G
Sbjct: 274 PTTPGLDGWVESILEALRAHG 294
>01_05_0251 +
19952882-19955459,19956209-19956245,19956370-19956586,
19957063-19957221,19957397-19957516,19957609-19957719
Length = 1073
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/58 (27%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 26 FVEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCW--DPTKFVIWNSKDVY 81
F+E L + N EE+ + +L N LT+P + ++ C + TK ++ + D Y
Sbjct: 320 FLEMLSMLAENFEEVGKVVLNNAPKNCKLTAPEIQKQIANCCAKETTKLIMEDLGDEY 377
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.316 0.133 0.374
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,824,783
Number of Sequences: 37544
Number of extensions: 202238
Number of successful extensions: 520
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 12
length of query: 248
length of database: 14,793,348
effective HSP length: 80
effective length of query: 168
effective length of database: 11,789,828
effective search space: 1980691104
effective search space used: 1980691104
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)
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