GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000197-TA|BGIBMGA000197-PA|IPR003754|Uroporphyrinogen
III synthase HEM4
         (248 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   6e-11
SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)                 30   1.6  
SB_22956| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)               29   2.7  
SB_43021| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_17328| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_32963| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09)                 28   8.3  
SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_18290| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.3  
SB_8304| Best HMM Match : PLAT (HMM E-Value=0)                         28   8.3  

>SB_56440| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1142

 Score = 64.9 bits (151), Expect = 6e-11
 Identities = 30/70 (42%), Positives = 42/70 (60%)

Query: 120 KTSTFLFPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLMELNNLNDSPSGLA 179
           +T  FLFPCGNLR ETIP  +Q+ G+ L  + VY+T ++  L   L         PS + 
Sbjct: 90  QTKPFLFPCGNLRKETIPTEMQNAGVPLKGLQVYKTCKHTELAQNLTSHVEEKGVPSVIV 149

Query: 180 FFSPSGCEYI 189
           FFSPSG +++
Sbjct: 150 FFSPSGVQFV 159



 Score = 42.3 bits (95), Expect = 4e-04
 Identities = 23/70 (32%), Positives = 39/70 (55%), Gaps = 6/70 (8%)

Query: 3  IVLFKGESED-----YQRIFRENNFETIFVEPLQFIYINIEELSQKLLQ-NDYDGMILTS 56
          ++L +  S+D     Y    R + F+   +  L F + N+++L + L +  +Y G+ILTS
Sbjct: 8  VLLLRSSSDDPKQDRYHMELRSHGFQCTSIPVLSFEFENLDKLEKMLSEPTEYGGIILTS 67

Query: 57 PRAVEAVSKC 66
           R VEA+ KC
Sbjct: 68 ARGVEAMEKC 77


>SB_57731| Best HMM Match : Vicilin_N (HMM E-Value=8.2)
          Length = 196

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 126 FPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLME 167
           +PCGN    +   +L+++G    A TV    EN+N + L +E
Sbjct: 38  YPCGNFSDTSSLKLLKTKGSIGHAFTVCIHTENQNQRLLTLE 79


>SB_22956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 117

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/42 (33%), Positives = 23/42 (54%)

Query: 126 FPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLME 167
           +PCGN    +   +L+++G    A TV    EN+N + L +E
Sbjct: 38  YPCGNFSDTSSLKLLKTKGSIGHAFTVCIHTENQNQRLLTLE 79


>SB_33968| Best HMM Match : Transformer (HMM E-Value=5.1)
          Length = 471

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 14/42 (33%), Positives = 22/42 (52%)

Query: 126 FPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLME 167
           +PCGN    +   +L+++G    A TV    EN N + L +E
Sbjct: 76  YPCGNFSDTSSLKLLKTKGSIGHAFTVCIHTENHNQRLLTLE 117


>SB_43021| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 13/35 (37%), Positives = 20/35 (57%)

Query: 126 FPCGNLRSETIPNMLQSEGITLDAITVYETQENEN 160
           +PCGNL   +   +L+++G    A TV    EN+N
Sbjct: 39  YPCGNLSDTSSLKLLKTKGSIGHAFTVCIHTENQN 73


>SB_17328| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 156

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 114 ILKDKKKTSTFLFPCGNLRSETIPNMLQSEGITLDAI 150
           I KD   TST L P G  R+ ++P    S G+  D +
Sbjct: 97  ISKDSSSTSTSLLPRGGTRTNSLPRADFSSGMEHDKL 133


>SB_32963| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 124

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 126 FPCGNLRSETIPNMLQSEGITLDAITVYETQENEN 160
           +PCGN    +   +L+++G    A TV    EN+N
Sbjct: 38  YPCGNFSDTSSLKLLKTKGSIAHAFTVCIHTENQN 72


>SB_41133| Best HMM Match : LRR_1 (HMM E-Value=2.2e-09)
          Length = 539

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 4/66 (6%)

Query: 158 NENLKALLMELNNLNDSPSGLAFFSPSGCEYIHRQLQTFSNRLSLLPHFAIGNSTAHKIE 217
           N+ L +L + LN+LND  +   F +  G   + ++L+   N +S +  F +G S A    
Sbjct: 234 NKTLHSLDLSLNSLNDKNTTPFFIALKGNSSL-KELKMSYNDISEVAGFRLGGSLA---V 289

Query: 218 NLGVEI 223
           N G+E+
Sbjct: 290 NKGLEV 295


>SB_19709| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 613

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 16/55 (29%), Positives = 29/55 (52%), Gaps = 1/55 (1%)

Query: 130 NLRSETIPNMLQSEGITLDAITVYETQENENLKALLMELNNLNDSPSGLAFFSPS 184
           N+     PN++ SE  T DAI ++ T    ++   L++ ++    P G+ FF P+
Sbjct: 414 NIAIVIAPNIIYSEQDTSDAINLHHTGVQSSIVEALIQHHSW-FFPEGVDFFRPA 467


>SB_18290| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 77

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 13/44 (29%), Positives = 24/44 (54%)

Query: 126 FPCGNLRSETIPNMLQSEGITLDAITVYETQENENLKALLMELN 169
           +PCGN    +   +L+++G    A TV    EN+N    +++L+
Sbjct: 25  YPCGNFSDTSSLKLLKTKGSIGHAFTVCIHTENQNQVEKVLDLS 68


>SB_8304| Best HMM Match : PLAT (HMM E-Value=0)
          Length = 1182

 Score = 27.9 bits (59), Expect = 8.3
 Identities = 10/22 (45%), Positives = 15/22 (68%)

Query: 107 AENLSKIILKDKKKTSTFLFPC 128
           A NL K++++D K    F+FPC
Sbjct: 94  AWNLGKVMVEDVKSREVFVFPC 115


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,958,744
Number of Sequences: 59808
Number of extensions: 246608
Number of successful extensions: 1161
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1149
Number of HSP's gapped (non-prelim): 14
length of query: 248
length of database: 16,821,457
effective HSP length: 80
effective length of query: 168
effective length of database: 12,036,817
effective search space: 2022185256
effective search space used: 2022185256
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 59 (27.9 bits)