GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000197-TA|BGIBMGA000197-PA|IPR003754|Uroporphyrinogen
III synthase HEM4
         (248 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82059-2|CAB04876.2|  576|Caenorhabditis elegans Hypothetical pr...    31   1.0  
Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.     28   5.4  

>Z82059-2|CAB04876.2|  576|Caenorhabditis elegans Hypothetical
           protein T27E9.5 protein.
          Length = 576

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)

Query: 25  IFVEPLQF-IYINIEELSQKLLQNDYDGMILTSPRAVEAVSKCWDPTKFVIWNSKDVYTV 83
           I+V  LQF ++ + ++L + L   D +G+   S    E  S+CW+ +   IW+  D +  
Sbjct: 212 IYVIVLQFALFQSFDDLKKILTWLDSEGLGQKSLEEKEYASECWNLSPAKIWSHVDFFAF 271

Query: 84  GEMSSQKIK 92
              +   +K
Sbjct: 272 AHFTGWIMK 280


>Z82279-2|CAB05260.2|  256|Caenorhabditis elegans Hypothetical
           protein R03C1.3a protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 139 MLQSEGITLDAITVYETQENENLKALLMELNNLNDSPSGLAFFSPSGCEYIHRQLQTFSN 198
           +LQS+   L++ ++      EN+   L   N LN+ P  L   SP G   +   +Q   N
Sbjct: 109 LLQSQ---LNSQSMMNRVTQENVSRALTSFNLLNNLPGALPSLSPMG--RLQHSMQLSPN 163

Query: 199 RLSLLPHFAIGNSTAHKIENL 219
            L++    +    T H+I  L
Sbjct: 164 SLNMQKKQSRPTFTGHQIYQL 184


>AY151209-1|AAN72826.1|  256|Caenorhabditis elegans COG-1A protein.
          Length = 256

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 5/81 (6%)

Query: 139 MLQSEGITLDAITVYETQENENLKALLMELNNLNDSPSGLAFFSPSGCEYIHRQLQTFSN 198
           +LQS+   L++ ++      EN+   L   N LN+ P  L   SP G   +   +Q   N
Sbjct: 109 LLQSQ---LNSQSMMNRVTQENVSRALTSFNLLNNLPGALPSLSPMG--RLQHSMQLSPN 163

Query: 199 RLSLLPHFAIGNSTAHKIENL 219
            L++    +    T H+I  L
Sbjct: 164 SLNMQKKQSRPTFTGHQIYQL 184


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,473,932
Number of Sequences: 27539
Number of extensions: 206116
Number of successful extensions: 510
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 510
Number of HSP's gapped (non-prelim): 3
length of query: 248
length of database: 12,573,161
effective HSP length: 80
effective length of query: 168
effective length of database: 10,370,041
effective search space: 1742166888
effective search space used: 1742166888
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)