GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000197-TA|BGIBMGA000197-PA|IPR003754|Uroporphyrinogen
III synthase HEM4
         (248 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              22   4.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    22   6.0  

>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 10/40 (25%), Positives = 20/40 (50%)

Query: 27 VEPLQFIYINIEELSQKLLQNDYDGMILTSPRAVEAVSKC 66
          ++ LQ I +     SQK++   Y+G +      V++  +C
Sbjct: 26 IQTLQPICVGETGTSQKIIDEVYNGNVNVEDENVQSYVEC 65


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 10/19 (52%), Positives = 12/19 (63%)

Query: 201 SLLPHFAIGNSTAHKIENL 219
           SL+PH A   STAH +  L
Sbjct: 102 SLVPHMAWQLSTAHLLAQL 120


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.316    0.133    0.374 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 61,510
Number of Sequences: 429
Number of extensions: 2451
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 248
length of database: 140,377
effective HSP length: 56
effective length of query: 192
effective length of database: 116,353
effective search space: 22339776
effective search space used: 22339776
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 43 (21.4 bits)