Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (175 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein.          29   6.6  
M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein.                   29   6.6  

>U93569-2|AAC51271.1| 1275|Homo sapiens putative p150 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 32/137 (23%), Positives = 54/137 (39%), Gaps = 11/137 (8%)

Query: 19  QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVF-VDLTAAYDTVAPGTAVQTTQA--- 74
           Q GF PG      +     +++       K+  +  +D   A+D +     ++T      
Sbjct: 563 QVGFIPGMQGWFNIRKSINVIQHINRAKDKNHVIISIDAEKAFDKIQQPFMLKTLNKLGI 622

Query: 75  DPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETL 134
           D +Y+KI   I D  T     + L      +  L  G  QG  L+P LFN+    V E L
Sbjct: 623 DGMYLKIIRAIYDKPTAN---IILNGQKLEAFPLKTGTRQGCPLSPLLFNI----VLEVL 675

Query: 135 SRKFAYADDLALVAQGR 151
           +R      ++  +  G+
Sbjct: 676 ARAIRQEKEIKGIQLGK 692


>M80340-1|AAA51622.1| 1275|Homo sapiens ORF2 protein.
          Length = 1275

 Score = 29.5 bits (63), Expect = 6.6
 Identities = 33/137 (24%), Positives = 53/137 (38%), Gaps = 11/137 (8%)

Query: 19  QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVF-VDLTAAYDTVAPGTAVQTTQA--- 74
           Q GF PG      +     +++     N K+  +  +D   A+D +     ++T      
Sbjct: 563 QVGFIPGMQGWFNIRKSINVIQHINRANDKNHMIISIDAEKAFDKIQQPFMLKTLNKLGI 622

Query: 75  DPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETL 134
           D  Y KI   I D  T     + L      +  L  G  QG  L+P LFN+    V E L
Sbjct: 623 DGTYFKIIRAIYDKPTAN---IILNGQKLEAFPLKTGTRQGCPLSPLLFNI----VLEVL 675

Query: 135 SRKFAYADDLALVAQGR 151
           +R      ++  +  G+
Sbjct: 676 ARAIRQEKEIKGIQLGK 692


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,716,144
Number of Sequences: 224733
Number of extensions: 903626
Number of successful extensions: 1341
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1341
Number of HSP's gapped (non-prelim): 2
length of query: 175
length of database: 73,234,838
effective HSP length: 85
effective length of query: 90
effective length of database: 54,132,533
effective search space: 4871927970
effective search space used: 4871927970
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)