Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (175 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    25   0.41 
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    25   0.41 
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               22   2.9  
AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   6.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.7  

>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 2/16 (12%)

Query: 125 VYTHDVPETLS--RKF 138
           +YTHD+PET +  RKF
Sbjct: 255 IYTHDIPETYNVVRKF 270


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 25.0 bits (52), Expect = 0.41
 Identities = 10/16 (62%), Positives = 13/16 (81%), Gaps = 2/16 (12%)

Query: 125 VYTHDVPETLS--RKF 138
           +YTHD+PET +  RKF
Sbjct: 255 IYTHDIPETYNVVRKF 270


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 10/32 (31%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 9   GVFASIFMPKQAGFRPGRSCSDQVLALTTLLE 40
           G+ A + +  Q GF PG+    Q+  ++T +E
Sbjct: 160 GIGAKLLL--QMGFEPGKGLGKQLQGISTPVE 189


>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP
          synthase 16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/21 (42%), Positives = 12/21 (57%)

Query: 49 SSTVFVDLTAAYDTVAPGTAV 69
          S+ +F  L AAY T   GT +
Sbjct: 20 SAIIFSALGAAYGTAKSGTGI 40


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 6.7
 Identities = 9/17 (52%), Positives = 11/17 (64%)

Query: 45 ENLKSSTVFVDLTAAYD 61
          ENL+    FVD+T A D
Sbjct: 23 ENLRDDEDFVDVTLACD 39


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 46,911
Number of Sequences: 429
Number of extensions: 1837
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 175
length of database: 140,377
effective HSP length: 54
effective length of query: 121
effective length of database: 117,211
effective search space: 14182531
effective search space used: 14182531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)