GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (175 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          22   2.4  
AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory recept...    21   4.3  
AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory recept...    21   5.6  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   5.6  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    20   9.9  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 78  YIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLA 119
           Y  + +VIE       FR  LG   S  +V++   PQ  VL+
Sbjct: 243 YRSVDDVIEKGKRPGAFRTTLGSELSKVKVIDMTGPQQRVLS 284


>AM292348-1|CAL23160.2|  346|Tribolium castaneum gustatory receptor
           candidate 27 protein.
          Length = 346

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/41 (21%), Positives = 19/41 (46%)

Query: 29  SDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAV 69
           SD +  L  ++  GF    +S  +F++    Y+ +   T +
Sbjct: 204 SDTLRNLDKIVTNGFRNVAESRKIFIECIEQYNVILRYTKI 244


>AM292373-1|CAL23185.2|  360|Tribolium castaneum gustatory receptor
           candidate 52 protein.
          Length = 360

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 69  VQTTQADPLYIK-IYNVIEDALTNRPFRVHLGDNSSLSRVLNN 110
           VQ T    LY++ IY V+  ALT +P    L  N  + +  NN
Sbjct: 67  VQITLDATLYVQNIYTVLT-ALTKKPLWFKLLKNLKMVQNHNN 108


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 69  VQTTQADPLYIK-IYNVIEDALTNRPFRVHLGDNSSLSRVLNN 110
           VQ T    LY++ IY V+  ALT +P    L  N  + +  NN
Sbjct: 67  VQITLDATLYVQNIYTVLT-ALTKKPLWFKLLKNLKMVQNHNN 108


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)

Query: 16   MPKQAGFRPGRSCSDQVLA 34
            +PK  G +P  +CS+   A
Sbjct: 1267 LPKMGGPQPYSACSENAFA 1285


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,316
Number of Sequences: 317
Number of extensions: 1612
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 175
length of database: 114,650
effective HSP length: 53
effective length of query: 122
effective length of database: 97,849
effective search space: 11937578
effective search space used: 11937578
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.3 bits)
S2: 40 (20.2 bits)