GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.06 |||mitochondrial DNA binding endonuclease|Schizosacchar...    48   1e-06
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T...    27   1.2  
SPBC16A3.06 |||tRNA specific adenosine deaminase |Schizosaccharo...    27   1.2  
SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc2...    26   3.6  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   3.6  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    25   6.3  

>SPMIT.06 |||mitochondrial DNA binding
           endonuclease|Schizosaccharomyces pombe|chr
           mitochondrial|||Manual
          Length = 807

 Score = 47.6 bits (108), Expect = 1e-06
 Identities = 37/152 (24%), Positives = 68/152 (44%), Gaps = 16/152 (10%)

Query: 10  VFASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFV--DLTAAYDTVAPGT 67
           ++  +F     GFRPGRSC   + ++ T        N K  T ++  D+ A +D++    
Sbjct: 331 IYEPLFNTASHGFRPGRSCHSALRSIFT--------NFKGCTWWIEGDIKACFDSIPHDK 382

Query: 68  AVQTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYT 127
            +    +     +   +I  AL       +L +N     ++  G PQGS+++P L N+Y 
Sbjct: 383 LIALLSSKIKDQRFIQLIRKALNAG----YLTENRYKYDIV--GTPQGSIVSPILANIYL 436

Query: 128 HDVPETLSRKFAYADDLALVAQGRSIETTECH 159
           H + E +    +  D    +A+ R+ E+   H
Sbjct: 437 HQLDEFIENLKSEFDYKGPIARKRTSESRHLH 468


>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 988

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 6/57 (10%)

Query: 80  KIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHD-VPETLS 135
           +I+ ++++ L+     V +G++  L +V   G+PQGS+L+  L + Y  D + E LS
Sbjct: 677 EIFKMLKEHLSGHI--VKIGNSQYLQKV---GIPQGSILSSFLCHFYMEDLIDEYLS 728


>SPBC16A3.06 |||tRNA specific adenosine deaminase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 14/52 (26%), Positives = 28/52 (53%), Gaps = 1/52 (1%)

Query: 65  PGTAVQTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGS 116
           P T ++T + + LY +  N  E   T+    + +GD    ++V++NG+  G+
Sbjct: 269 PFTVLETDE-NFLYSRPLNQAEKTATSTNVLIWIGDKMQCTQVIHNGIKAGT 319


>SPBC25D12.04 |suc22||ribonucleotide reductase small subunit Suc22
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 11/25 (44%), Positives = 17/25 (68%)

Query: 9   GVFASIFMPKQAGFRPGRSCSDQVL 33
           G FASIF  K+ G  PG + S++++
Sbjct: 235 GSFASIFWLKKRGLMPGLTFSNELI 259


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 2/46 (4%)

Query: 13  SIFMPKQAGFRPGRS-CSDQVL-ALTTLLERGFNENLKSSTVFVDL 56
           S F P     R   S C D ++ +L T +   F+E+  + TVF DL
Sbjct: 196 STFQPDVTAIREQLSRCLDHIINSLGTRVSGDFDEDFPTGTVFFDL 241


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 12/43 (27%), Positives = 21/43 (48%), Gaps = 1/43 (2%)

Query: 100 DNSSLSRVLNNGLPQGSVLAPT-LFNVYTHDVPETLSRKFAYA 141
           + S  ++ +N    Q S  A T + N Y+ D P  ++  F Y+
Sbjct: 68  NTSENTQFMNTDYSQTSSYASTPMSNAYSRDAPAAINNNFGYS 110


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 770,908
Number of Sequences: 5004
Number of extensions: 29800
Number of successful extensions: 68
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 64
Number of HSP's gapped (non-prelim): 6
length of query: 175
length of database: 2,362,478
effective HSP length: 68
effective length of query: 107
effective length of database: 2,022,206
effective search space: 216376042
effective search space used: 216376042
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)