Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
(175 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 33 0.17
01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496 31 0.68
01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898 30 1.2
12_02_0017 - 12357029-12357070,12357434-12357503,12357722-123578... 29 1.6
06_03_0846 - 25328224-25330613,25330716-25330794 28 4.8
03_05_0944 + 29046793-29046922,29048091-29048464,29048556-290486... 28 4.8
10_08_0974 + 21969713-21971914 27 6.3
07_01_0951 - 8001093-8001344,8001475-8001990,8002057-8002209,800... 27 8.4
01_07_0164 - 41584725-41585674,41587234-41587240 27 8.4
01_07_0004 - 40354253-40354353,40354598-40354670,40356196-403563... 27 8.4
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 32.7 bits (71), Expect = 0.17
Identities = 16/54 (29%), Positives = 28/54 (51%)
Query: 10 VFASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV 63
VF + Q GF GR S+ ++ T L++ + ++ V +D T A+D+V
Sbjct: 1012 VFLRMIHLDQTGFLKGRCISENLIYATELIQACYRRKCQTIIVKLDFTKAFDSV 1065
>01_01_0168 + 1433084-1433320,1433432-1434889,1435443-1435496
Length = 582
Score = 30.7 bits (66), Expect = 0.68
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 43 FNENLKSSTVFVDLTAAYDTVAPGTAVQTTQADPLYIKIYNVI 85
F+ +L +STVFV T+A PG ++ Q PL + N +
Sbjct: 81 FHRDLPASTVFVFGTSAATATFPGPTIEAAQGVPLSVTWQNYL 123
>01_07_0168 + 41621762-41621768,41621892-41622827,41622943-41623898
Length = 632
Score = 29.9 bits (64), Expect = 1.2
Identities = 32/135 (23%), Positives = 50/135 (37%), Gaps = 11/135 (8%)
Query: 2 VSPRISPGVFASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFV------- 54
VS I V A+ F P FRP + + L + L + +V
Sbjct: 130 VSTAIKMDVVANTFPPSHGVFRP--DVQQFMAPIARFLANTVSPLLVNVYPYVSYRENPR 187
Query: 55 DLTAAYDTVAPGTAVQTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQ 114
D++ Y T PGT V+ + + Y ++N + DA+ + G + V G P
Sbjct: 188 DISLNYATFQPGTTVRDSDSGLTYTNLFNAMVDAVYAALEKA--GTPNVRIAVSETGWPS 245
Query: 115 GSVLAPTLFNVYTHD 129
A T N H+
Sbjct: 246 AGGFAATAENAMNHN 260
>12_02_0017 -
12357029-12357070,12357434-12357503,12357722-12357852,
12358836-12358882,12359762-12360044,12360547-12362413,
12362454-12362665
Length = 883
Score = 29.5 bits (63), Expect = 1.6
Identities = 25/88 (28%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Query: 10 VFASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFV--DLTAAYDTVAPGT 67
VF F PK FRPGR + R + + F+ DLT D ++P T
Sbjct: 163 VFEPRFSPKSHAFRPGRGPHTAI--------RSVRSHFAAYLWFISADLTGVVDALSPYT 214
Query: 68 AVQTTQADPLYIKIYNVIEDALTNRPFR 95
+ Q K+ ++++ AL N P R
Sbjct: 215 ILSCVQKAVSDRKVLSLLKSAL-NAPVR 241
>06_03_0846 - 25328224-25330613,25330716-25330794
Length = 822
Score = 27.9 bits (59), Expect = 4.8
Identities = 11/17 (64%), Positives = 13/17 (76%)
Query: 110 NGLPQGSVLAPTLFNVY 126
+GLPQ VLAP L N+Y
Sbjct: 291 HGLPQEGVLAPILMNIY 307
>03_05_0944 + 29046793-29046922,29048091-29048464,29048556-29048687,
29048829-29049210,29049370-29049513,29049593-29049777,
29049925-29050051,29050603-29050676,29051071-29051147,
29051256-29051292,29051453-29051619,29051800-29051983,
29052053-29052130,29052451-29052570,29052648-29052707,
29053057-29053179,29053848-29053941,29054019-29054197,
29054737-29055039,29055373-29055474,29055553-29055693,
29055831-29055995,29056168-29056344,29056432-29056554,
29057787-29057867,29057983-29058099,29058214-29058386,
29058846-29058923,29058994-29059141,29059755-29059877,
29060015-29060071,29060145-29060255,29060382-29060573,
29060690-29060863,29061263-29061373,29061462-29061531,
29061734-29061812,29061898-29062000,29062086-29062256,
29062348-29062470,29062548-29062661,29062935-29063041,
29063117-29063168,29063245-29063351,29063589-29063703,
29063819-29063929,29064016-29064153,29064230-29064352,
29064535-29064606,29064774-29064886,29066780-29067110,
29067199-29067381,29068669-29068863,29068943-29069110,
29069208-29069340,29069511-29069595,29069726-29069765
Length = 2591
Score = 27.9 bits (59), Expect = 4.8
Identities = 14/49 (28%), Positives = 26/49 (53%)
Query: 82 YNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDV 130
Y+ I DAL+++ + V +L+ L+ L + TLF++Y D+
Sbjct: 1092 YSGIFDALSHKNYNVRAAAAEALAAALDENLDKMQDTLSTLFSLYIRDL 1140
>10_08_0974 + 21969713-21971914
Length = 733
Score = 27.5 bits (58), Expect = 6.3
Identities = 25/97 (25%), Positives = 37/97 (38%), Gaps = 6/97 (6%)
Query: 10 VFASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAV 69
V+ + F PK FRPGRS A + R F L + DL+ + P V
Sbjct: 203 VYEARFSPKSFAFRPGRSPH----AAIRTIRRSFAPYL--WYIKGDLSPLLHSPDPALVV 256
Query: 70 QTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSR 106
D K+ +++ AL P GD + +
Sbjct: 257 GALIRDVRDKKVVDLVRSALLTPPVTARPGDEDAAKK 293
>07_01_0951 -
8001093-8001344,8001475-8001990,8002057-8002209,
8002272-8002568
Length = 405
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/56 (32%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 24 PGRSCSDQVLALTTLLERGFNENLKSSTV-FVDLTAAYDTVAPGTAVQTTQADPLY 78
PG +Q+LAL E F E L+ + LTAA + A++T A L+
Sbjct: 73 PGTDLVEQMLALNAACEAPFREALRRVWYWYAALTAAAEVGVAALALRTDNAAALH 128
>01_07_0164 - 41584725-41585674,41587234-41587240
Length = 318
Score = 27.1 bits (57), Expect = 8.4
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 55 DLTAAYDTVAPGTAVQTTQADPLYIKIYNVIEDAL 89
D+ Y T PGT V+ + Y ++N + DA+
Sbjct: 188 DIPLNYATFQPGTTVRDNDSGLTYTNLFNAMVDAV 222
>01_07_0004 -
40354253-40354353,40354598-40354670,40356196-40356319,
40357821-40358222,40358704-40358732
Length = 242
Score = 27.1 bits (57), Expect = 8.4
Identities = 18/67 (26%), Positives = 30/67 (44%)
Query: 7 SPGVFASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPG 66
SP FA+I PKQ PG S + T E+ KSS + ++ ++ + G
Sbjct: 171 SPFCFANICNPKQGKVSPGSSELLIAIIGTFNAEKENKAETKSSKLVIERLKSFSALIFG 230
Query: 67 TAVQTTQ 73
+Q ++
Sbjct: 231 AKIQKSR 237
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,707,807
Number of Sequences: 37544
Number of extensions: 170836
Number of successful extensions: 330
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 324
Number of HSP's gapped (non-prelim): 10
length of query: 175
length of database: 14,793,348
effective HSP length: 77
effective length of query: 98
effective length of database: 11,902,460
effective search space: 1166441080
effective search space used: 1166441080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)
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