Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
(175 letters)
Database: fruitfly
52,641 sequences; 24,830,863 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein. 94 8e-20
AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse tran... 94 8e-20
AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p pro... 77 1e-14
AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein ... 73 2e-13
AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein ... 73 2e-13
AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein ... 73 2e-13
AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein ... 73 2e-13
M17214-2|AAA28508.1| 858|Drosophila melanogaster protein ( D.me... 71 1e-12
AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p pro... 70 2e-12
X17551-2|CAA35587.1| 888|Drosophila melanogaster protein ( D.me... 68 6e-12
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ... 68 6e-12
AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p pro... 66 3e-11
AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein. 65 4e-11
AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein ... 61 7e-10
U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative rever... 60 2e-09
U02279-1|AAA18301.1| 964|Drosophila melanogaster protein ( Dros... 60 2e-09
AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein ... 60 2e-09
AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein ... 60 2e-09
AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein ... 60 2e-09
AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein ... 60 2e-09
M22874-2|AAA28675.1| 916|Drosophila melanogaster protein ( D.me... 56 2e-08
AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p pro... 56 2e-08
AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown prot... 54 1e-07
X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein ( Dros... 39 0.004
X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein ( Dros... 35 0.053
AJ278684-2|CAB99192.1| 989|Drosophila melanogaster endonuclease... 35 0.053
AE013599-2600|AAF57763.1| 253|Drosophila melanogaster CG5767-PA... 29 4.6
AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p pro... 28 8.1
>AY180919-1|AAN87272.1| 884|Drosophila melanogaster ORF1 protein.
Length = 884
Score = 94.3 bits (224), Expect = 8e-20
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAVQTTQADPLY 78
Q GFR G + L L ++ V +D+ AA+DTV + +
Sbjct: 573 QYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTP 632
Query: 79 IKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSRKF 138
I + ++++ LT+R F V+L + S R+LN G+PQGSVL PTLFN++THD+P+ +
Sbjct: 633 IYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVL 692
Query: 139 A-YADDLALVAQGRSIETTECHLENDMATLNNYFIRWR 175
+ +ADD A+ + G S +++ + L+ Y+ +W+
Sbjct: 693 SLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWK 730
>AF456125-1|AAL57609.1| 832|Drosophila melanogaster reverse
transcriptase protein.
Length = 832
Score = 94.3 bits (224), Expect = 8e-20
Identities = 50/158 (31%), Positives = 85/158 (53%), Gaps = 1/158 (0%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAVQTTQADPLY 78
Q GFR G + L L ++ V +D+ AA+DTV + +
Sbjct: 521 QYGFRNGLNTILPTLKLRNYIKESIQSKQSVGLVTLDIEAAFDTVWHDGLLHKLKMIGTP 580
Query: 79 IKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSRKF 138
I + ++++ LT+R F V+L + S R+LN G+PQGSVL PTLFN++THD+P+ +
Sbjct: 581 IYLIKIVQNFLTHRYFSVNLNSSQSARRILNAGVPQGSVLGPTLFNIFTHDIPQATNCVL 640
Query: 139 A-YADDLALVAQGRSIETTECHLENDMATLNNYFIRWR 175
+ +ADD A+ + G S +++ + L+ Y+ +W+
Sbjct: 641 SLFADDAAVYSAGFSYSEINQSMQSYLNELDIYYKKWK 678
>AY060438-1|AAL25477.1| 906|Drosophila melanogaster LD46618p
protein.
Length = 906
Score = 77.4 bits (182), Expect = 1e-14
Identities = 53/166 (31%), Positives = 83/166 (50%), Gaps = 12/166 (7%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR G S +QV LT + + F++ + VF+D+ A+D V G + + P
Sbjct: 549 QFGFRQGHSTVEQVHRLTKHILQAFDDKEYCNAVFIDMQQAFDRVWHDGLISKVKKLFPA 608
Query: 78 YIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSRK 137
Y V++ L +R F V + ++ S+ RV+ G+PQGSVL P L++V+T D+P +
Sbjct: 609 --PYYGVLKSYLEDRRFMVRVRNSYSIPRVMRAGVPQGSVLGPLLYSVFTADLPCPNAYH 666
Query: 138 FA---------YADDLALVAQGRSIETTECHLENDMATLNNYFIRW 174
A YADD+AL+ L+ + TL + RW
Sbjct: 667 MADPRKALLATYADDIALLYSSNCCNEAARGLQEYLTTLAAWCKRW 712
>AM040243-1|CAJ13339.1| 656|Drosophila melanogaster pol protein
protein.
Length = 656
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 11 FASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAV 69
FA Q GFR Q+ +T + + F+E S F+D+T A+D V G
Sbjct: 141 FAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLY 200
Query: 70 QTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLN--NGLPQGSVLAPTLFNVYT 127
+ ++ P Y+ ++++E+ L+NR F V + D + SR+ N G+PQGS+L P L+++Y+
Sbjct: 201 KLSRLIPRYL--FDLLENYLSNRTFSVRI-DGETTSRIGNIRAGVPQGSILGPVLYSIYS 257
Query: 128 HDVPETLSRKF 138
D+P + + +
Sbjct: 258 SDMPYPIVKDY 268
>AM040242-2|CAJ13338.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 11 FASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAV 69
FA Q GFR Q+ +T + + F+E S F+D+T A+D V G
Sbjct: 588 FAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLY 647
Query: 70 QTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLN--NGLPQGSVLAPTLFNVYT 127
+ ++ P Y+ ++++E+ L+NR F V + D + SR+ N G+PQGS+L P L+++Y+
Sbjct: 648 KLSRLIPRYL--FDLLENYLSNRTFSVRI-DGETTSRIGNIRAGVPQGSILGPVLYSIYS 704
Query: 128 HDVPETLSRKF 138
D+P + + +
Sbjct: 705 SDMPYPIVKDY 715
>AJ542582-2|CAD65871.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 11 FASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAV 69
FA Q GFR Q+ +T + + F+E S F+D+T A+D V G
Sbjct: 588 FAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLY 647
Query: 70 QTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLN--NGLPQGSVLAPTLFNVYT 127
+ ++ P Y+ ++++E+ L+NR F V + D + SR+ N G+PQGS+L P L+++Y+
Sbjct: 648 KLSRLIPRYL--FDLLENYLSNRTFSVRI-DGETTSRIGNIRAGVPQGSILGPVLYSIYS 704
Query: 128 HDVPETLSRKF 138
D+P + + +
Sbjct: 705 SDMPYPIVKDY 715
>AJ542581-2|CAD65869.1| 1103|Drosophila melanogaster pol protein
protein.
Length = 1103
Score = 72.9 bits (171), Expect = 2e-13
Identities = 41/131 (31%), Positives = 72/131 (54%), Gaps = 6/131 (4%)
Query: 11 FASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAV 69
FA Q GFR Q+ +T + + F+E S F+D+T A+D V G
Sbjct: 588 FAKAIPSHQFGFRKDHGAEHQLARVTQFILKAFDEKDVCSATFLDITEAFDRVWHDGLLY 647
Query: 70 QTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLN--NGLPQGSVLAPTLFNVYT 127
+ ++ P Y+ ++++E+ L+NR F V + D + SR+ N G+PQGS+L P L+++Y+
Sbjct: 648 KLSRLIPRYL--FDLLENYLSNRTFSVRI-DGETTSRIGNIRAGVPQGSILGPVLYSIYS 704
Query: 128 HDVPETLSRKF 138
D+P + + +
Sbjct: 705 SDMPYPIVKDY 715
>M17214-2|AAA28508.1| 858|Drosophila melanogaster protein (
D.melanogaster Fw repetitiveelement putative reverse
transcriptase, complete cds,and putative binding
protein, 3' end. ).
Length = 858
Score = 70.5 bits (165), Expect = 1e-12
Identities = 49/168 (29%), Positives = 80/168 (47%), Gaps = 6/168 (3%)
Query: 11 FASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAV 69
+ +I Q GFR +QV +TT + F + VF+D++ A+D V G
Sbjct: 538 YHNIIPAHQFGFRESHGTIEQVNRITTEIRTAFEYREYCTAVFLDVSQAFDKVWLDGLMF 597
Query: 70 QTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHD 129
+ + P + +++ L +R F V +S + G+PQGSVL PTL+ +YT D
Sbjct: 598 KIKISLPE--STHKLLKSYLYDRKFAVRCNTATSTVHTIEAGVPQGSVLGPTLYLIYTAD 655
Query: 130 VPETLSR--KFAYADDLALVAQGRSIETTECHLENDMATLNNYFIRWR 175
+P T SR +ADD A++++ RS L + + + WR
Sbjct: 656 IP-TNSRLTVSTFADDTAILSRSRSPIQATAQLALYLIDIKKWLSDWR 702
>AY060323-1|AAL25362.1| 241|Drosophila melanogaster GH20809p
protein.
Length = 241
Score = 70.1 bits (164), Expect = 2e-12
Identities = 47/156 (30%), Positives = 76/156 (48%), Gaps = 6/156 (3%)
Query: 5 RISPGVFASIFMPK-QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV 63
RISP + +P Q F +QV +TT + F + +F+D+ A+D V
Sbjct: 70 RISPHLKTHNTLPSYQFDFPAKHGAIEQVNRITTEIRTAFEHREYCTALFLDVAQAFDRV 129
Query: 64 -APGTAVQTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTL 122
G + Q P I+ +++ L R F V ++S + G+PQGSVL P L
Sbjct: 130 WLDGLMFKIIQLLPQ--NIHKLLKSYLDKRVFAVRCSSSTSSDFTIEAGVPQGSVLGPIL 187
Query: 123 FNVYTHDVPETLSRK-FAYADDLALVAQGR-SIETT 156
+ +YT D+P F +ADD A++++ R ++TT
Sbjct: 188 YTLYTADIPTNYQLTIFTFADDTAIISRSRCPVKTT 223
>X17551-2|CAA35587.1| 888|Drosophila melanogaster protein (
D.melanogaster white-one mutant DNA with Doc retroposon,
inserted inwhite locuspromoter region. ).
Length = 888
Score = 68.1 bits (159), Expect = 6e-12
Identities = 46/178 (25%), Positives = 83/178 (46%), Gaps = 5/178 (2%)
Query: 1 MVSPRISPGVFASIFMPK-QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAA 59
M+ RISP + + +P Q GFR +QV +T+ + F + +F+D+ A
Sbjct: 525 MLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQA 584
Query: 60 YDTV-APGTAVQTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVL 118
+D V G + + P + +++ L NR F + ++S + G+PQGSVL
Sbjct: 585 FDRVWLDGLLFKIIKLLPQ--NTHKLLKSYLYNRVFAIRCDTSTSRDCAIEAGVPQGSVL 642
Query: 119 APTLFNVYTHDVPETLS-RKFAYADDLALVAQGRSIETTECHLENDMATLNNYFIRWR 175
P L+ +YT D P + +ADD A++++ + L + ++ + WR
Sbjct: 643 GPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWR 700
>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
protein.
Length = 1219
Score = 68.1 bits (159), Expect = 6e-12
Identities = 48/165 (29%), Positives = 83/165 (50%), Gaps = 8/165 (4%)
Query: 11 FASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAVQ 70
+ ++ KQ GF+ G+S SD +L + L+ + + +S V +D + A+D V + +Q
Sbjct: 535 YNNLINDKQFGFKKGKSTSDCLLYVDYLITKS---KMHTSLVTLDFSRAFDRVGVHSIIQ 591
Query: 71 TTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDV 130
Q KI I++ ++NR V +G ++S L NG+PQGS ++ LF + + +
Sbjct: 592 QLQEWKTGPKIIKYIKNFMSNRKITVRVGPHTSSPLPLFNGIPQGSPISVILFLIAFNKL 651
Query: 131 PETLSR----KF-AYADDLALVAQGRSIETTECHLENDMATLNNY 170
+S KF AYADD L+ T +L+N + N+
Sbjct: 652 SNIISLHKEIKFNAYADDFFLIINFNKNTNTNFNLDNLFDDIENW 696
>AY047531-1|AAK77263.1| 888|Drosophila melanogaster GH03753p
protein.
Length = 888
Score = 65.7 bits (153), Expect = 3e-11
Identities = 45/178 (25%), Positives = 82/178 (46%), Gaps = 5/178 (2%)
Query: 1 MVSPRISPGVFASIFMPK-QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAA 59
M+ RISP + + +P Q GFR +QV +T+ + F + +F+D+ A
Sbjct: 525 MLLLRISPHLRINNTLPTHQFGFREKHGTIEQVNRITSEIRTAFEHREYCTAIFLDVAQA 584
Query: 60 YDTV-APGTAVQTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVL 118
+D V G + + P + +++ L N F + ++S + G+PQGSVL
Sbjct: 585 FDRVWLDGLLFKIIKLLPQ--NTHKLLKSYLYNTVFAIRCDTSTSRDCAIEAGVPQGSVL 642
Query: 119 APTLFNVYTHDVPETLS-RKFAYADDLALVAQGRSIETTECHLENDMATLNNYFIRWR 175
P L+ +YT D P + +ADD A++++ + L + ++ + WR
Sbjct: 643 GPILYTLYTADFPIDYNLTTSTFADDTAILSRSKCPIKATALLSRHLTSVERWLADWR 700
>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
Length = 1227
Score = 65.3 bits (152), Expect = 4e-11
Identities = 39/142 (27%), Positives = 69/142 (48%), Gaps = 5/142 (3%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAVQTTQADPLY 78
Q F+ S D +L + + S + D A+D V + + +
Sbjct: 548 QVAFKSNHSTMDALLRIQHFASNALSTKNHVSILATDFERAFDRVGIHAVLCRLERWGIG 607
Query: 79 IKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSRK- 137
++YN+I+ +TNR FRV + + +S S +L+NG+PQGS L+ LF + D+ + ++R
Sbjct: 608 PRLYNLIKAFMTNRSFRVRINNVTSNSHILHNGIPQGSPLSVVLFMIAIEDINDIVTRHK 667
Query: 138 ----FAYADDLALVAQGRSIET 155
YADD + + ++I T
Sbjct: 668 DIYISLYADDAIIFTKIKNINT 689
>AY600955-2|AAT12845.1| 1092|Drosophila melanogaster pol protein
protein.
Length = 1092
Score = 61.3 bits (142), Expect = 7e-10
Identities = 44/168 (26%), Positives = 80/168 (47%), Gaps = 15/168 (8%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR Q+ +T + F S VF+D++ A+D V G ++ + P
Sbjct: 605 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILP- 663
Query: 78 YIKIYNVIEDALTNRPFRV--HLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP---- 131
+Y ++E LTNR F V G+ S ++ G+PQGS L P L+++++ D+P
Sbjct: 664 -YNLYIILESYLTNRTFEVKDQAGETSRTGQI-GAGVPQGSNLGPLLYSIFSSDMPLPYI 721
Query: 132 --ETLSRKF---AYADDLALVAQGRSIETTECHLENDMATLNNYFIRW 174
+ +++ YADD +++ + EN + T +++ +W
Sbjct: 722 YRPSPTQRIMLSTYADDTIVLSSDTLATAATRNNENYLKTFSDWADKW 769
>U14101-2|AAC46494.1| 1084|Drosophila melanogaster putative reverse
transcriptase protein.
Length = 1084
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR Q+ +T + F S VF+D++ A+D V G ++ + P
Sbjct: 593 QFGFRKEHGSEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILP- 651
Query: 78 YIKIYNVIEDALTNRPFRV--HLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP 131
+Y ++E LTNR F V G+ S ++ G+PQGS L P L+++++ D+P
Sbjct: 652 -YNLYIILESYLTNRTFEVKDQAGETSRTGQI-GAGVPQGSNLGPLLYSIFSSDMP 705
>U02279-1|AAA18301.1| 964|Drosophila melanogaster protein (
Drosophila melanogastertelomere-associated transposons
TART, TART-A and HeT-A,and TART-A ORF2 gene, partial
cds. ).
Length = 964
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR Q+ +T + F S VF+D++ A+D V G ++ + P
Sbjct: 477 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILP- 535
Query: 78 YIKIYNVIEDALTNRPFRV--HLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP 131
+Y ++E LTNR F V G+ S ++ G+PQGS L P L+++++ D+P
Sbjct: 536 -YNLYIILESYLTNRTFEVKDQAGETSRAGQI-GAGVPQGSNLGPILYSIFSSDMP 589
>AY561850-2|AAS68534.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR Q+ +T + F S VF+D++ A+D V G ++ + P
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILP- 651
Query: 78 YIKIYNVIEDALTNRPFRV--HLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP 131
+Y ++E LTNR F V G+ S ++ G+PQGS L P L+++++ D+P
Sbjct: 652 -YNLYIILESYLTNRTFEVKDQAGETSRAGQI-GAGVPQGSNLGPILYSIFSSDMP 705
>AY035777-2|AAK77971.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR Q+ +T + F S VF+D++ A+D V G ++ + P
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILP- 651
Query: 78 YIKIYNVIEDALTNRPFRV--HLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP 131
+Y ++E LTNR F V G+ S ++ G+PQGS L P L+++++ D+P
Sbjct: 652 -YNLYIILESYLTNRTFEVKDQAGETSRAGQI-GAGVPQGSNLGPILYSIFSSDMP 705
>AM040245-1|CAJ13341.1| 1042|Drosophila melanogaster pol protein
protein.
Length = 1042
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR Q+ +T + F S VF+D++ A+D V G ++ + P
Sbjct: 555 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILP- 613
Query: 78 YIKIYNVIEDALTNRPFRV--HLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP 131
+Y ++E LTNR F V G+ S ++ G+PQGS L P L+++++ D+P
Sbjct: 614 -YNLYIILESYLTNRTFEVKDQAGETSRAGQI-GAGVPQGSNLGPILYSIFSSDMP 667
>AJ566116-2|CAD92793.1| 1080|Drosophila melanogaster pol protein
protein.
Length = 1080
Score = 60.1 bits (139), Expect = 2e-09
Identities = 36/116 (31%), Positives = 59/116 (50%), Gaps = 6/116 (5%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQADPL 77
Q GFR Q+ +T + F S VF+D++ A+D V G ++ + P
Sbjct: 593 QFGFRKEHGTEQQIARVTQFILEAFERKEYCSAVFLDISEAFDRVWHEGLLLKLAKILP- 651
Query: 78 YIKIYNVIEDALTNRPFRV--HLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP 131
+Y ++E LTNR F V G+ S ++ G+PQGS L P L+++++ D+P
Sbjct: 652 -YNLYIILESYLTNRTFEVKDQAGETSRAGQI-GAGVPQGSNLGPILYSIFSSDMP 705
>M22874-2|AAA28675.1| 916|Drosophila melanogaster protein (
D.melanogaster LINEelement J-1, clone J-1. ).
Length = 916
Score = 56.4 bits (130), Expect = 2e-08
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 16 MPK-QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQ 73
+PK Q GFR +Q+ + + F+D+ A+D V PG + +
Sbjct: 546 IPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKR 605
Query: 74 ADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP-- 131
P ++Y V++ L R F V + S + + G+PQGSVL PTL++V+ D+P
Sbjct: 606 LFPP--QLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTH 663
Query: 132 -------ETLSRKFAYADDLALVAQGRSIETTECHLENDMATLNNYFIRW 174
E YADD A++ + +SI L+ + + W
Sbjct: 664 TPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENW 713
>AY089343-1|AAL90081.2| 718|Drosophila melanogaster AT16518p
protein.
Length = 718
Score = 56.4 bits (130), Expect = 2e-08
Identities = 45/170 (26%), Positives = 74/170 (43%), Gaps = 13/170 (7%)
Query: 16 MPK-QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV-APGTAVQTTQ 73
+PK Q GFR +Q+ + + F+D+ A+D V PG + +
Sbjct: 348 IPKFQFGFRLQHGTPEQLHRVVNFALEAMENKEYAVGAFLDIQQAFDRVWHPGLLYKAKR 407
Query: 74 ADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP-- 131
P ++Y V++ L R F V + S + + G+PQGSVL PTL++V+ D+P
Sbjct: 408 LFPP--QLYLVVKSFLEERTFHVSVDGYKSSIKPIAAGVPQGSVLGPTLYSVFASDMPTH 465
Query: 132 -------ETLSRKFAYADDLALVAQGRSIETTECHLENDMATLNNYFIRW 174
E YADD A++ + +SI L+ + + W
Sbjct: 466 TPVTEVDEEDVLIATYADDTAVLTKSKSILAATSGLQEYLDAFQQWAENW 515
>AF237761-2|AAF81411.1| 908|Drosophila melanogaster unknown
protein.
Length = 908
Score = 53.6 bits (123), Expect = 1e-07
Identities = 38/162 (23%), Positives = 71/162 (43%), Gaps = 7/162 (4%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAVQTTQADPLY 78
Q GFR G +Q+ + + ++ +++F+D+ A+D V +Q L
Sbjct: 548 QFGFRAGHCTVEQLHRVVEQILTAYDSKEYCNSLFLDIREAFDRVWH-IGLQLKIKQTLP 606
Query: 79 IKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPET----- 133
+ +++ L R F V S + G+PQGSVL P L+ +Y+HD+P+
Sbjct: 607 APYFGLLKSYLEGRRFAVRFHSAISTEHNVAAGVPQGSVLGPLLYCLYSHDMPQPDVSLY 666
Query: 134 -LSRKFAYADDLALVAQGRSIETTECHLENDMATLNNYFIRW 174
S +ADD+ + + R +++ + + RW
Sbjct: 667 GKSMLATFADDVCVTYRSRCEHDAADGIQDFAYRFSEWARRW 708
>X51967-1|CAA36225.1| 1057|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type II retrotransposable
element R2Dm. ).
Length = 1057
Score = 38.7 bits (86), Expect = 0.004
Identities = 34/147 (23%), Positives = 60/147 (40%), Gaps = 12/147 (8%)
Query: 17 PKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAVQTTQADP 76
P+Q GF P C+D + +L +D++ A+D+++ + T +A
Sbjct: 444 PRQRGFLPTDGCADNATIVDLVLRHSHKHFRSCYIANLDVSKAFDSLSHASIYDTLRAYG 503
Query: 77 LYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSR 136
+ +++ ++ SS V G+ QG L+P LFN+ + TL
Sbjct: 504 APKGFVDYVQNTYEGGGTSLNGDGWSSEEFVPARGVKQGDPLSPILFNLVMDRLLRTLPS 563
Query: 137 KF------------AYADDLALVAQGR 151
+ A+ADDL L A+ R
Sbjct: 564 EIGAKVGNAITNAAAFADDLVLFAETR 590
>X51968-2|CAA36227.1| 1021|Drosophila melanogaster protein (
Drosophila melanogasterDNA for type I retrotransposable
element R1Dm. ).
Length = 1021
Score = 35.1 bits (77), Expect = 0.053
Identities = 37/138 (26%), Positives = 62/138 (44%), Gaps = 10/138 (7%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAPGTAVQTTQADPLY 78
Q GFR GR D + + + + + + FVD A+D V A+ AD L
Sbjct: 544 QFGFRQGRCVEDAWRHVKSSVGASAAQYVLGT--FVDFKGAFDNVEWSAALSRL-AD-LG 599
Query: 79 IKIYNVIEDALTNRPFRVHLGDNSSLSRV-LNNGLPQGSVLAPTLFNVYTHDVPETLS-- 135
+ + + + R R + +S V + G PQGS+ P ++++ + + L
Sbjct: 600 CREMGLWQSFFSGR--RAVIRSSSGTVEVPVTRGCPQGSISGPFIWDILMDVLLQRLQPY 657
Query: 136 -RKFAYADDLALVAQGRS 152
+ AYADDL L+ +G S
Sbjct: 658 CQLSAYADDLLLLVEGNS 675
>AJ278684-2|CAB99192.1| 989|Drosophila melanogaster
endonuclease/reverse transcriptase protein.
Length = 989
Score = 35.1 bits (77), Expect = 0.053
Identities = 37/148 (25%), Positives = 72/148 (48%), Gaps = 14/148 (9%)
Query: 18 KQAGFRPGRSCSDQVLALTTLLERGFNEN--LKSSTVF-----VDLTAAYDTVAPGTAVQ 70
+Q GFR G+S D + ++T + + N L S + +D+ A++T +
Sbjct: 513 QQYGFRKGKSTLDALKSVTDAARKALDGNRWLGGSKKYCAIITLDVKNAFNTARWPIILG 572
Query: 71 TTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDV 130
+ + I VI + +R ++ ++ S ++ G+PQGSVL P L+N+ +D
Sbjct: 573 AMRNLGVPDYIRGVIGNYFRDRVLW-YVTEDGPRSHQVSAGVPQGSVLGPILWNI-MYDG 630
Query: 131 PETLSRK-----FAYADDLALVAQGRSI 153
++S+ +ADD+A+ A ++I
Sbjct: 631 ILSISKPRGVELHCFADDVAITAVAKTI 658
>AE013599-2600|AAF57763.1| 253|Drosophila melanogaster CG5767-PA
protein.
Length = 253
Score = 28.7 bits (61), Expect = 4.6
Identities = 14/26 (53%), Positives = 14/26 (53%)
Query: 49 SSTVFVDLTAAYDTVAPGTAVQTTQA 74
SST D T A T APGTA T A
Sbjct: 220 SSTAAADTTVAVTTAAPGTAAPATTA 245
>AY071740-1|AAL49362.1| 184|Drosophila melanogaster RH47344p
protein.
Length = 184
Score = 27.9 bits (59), Expect = 8.1
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Query: 108 LNNGLPQGSVLAPTLFNVYTHDVPET----LSRKFAYADDLALV 147
+ G+PQGSVL P L+N + S +ADD+AL+
Sbjct: 47 VTGGVPQGSVLGPLLWNTMYDGILRLPLVGRSEIVGFADDVALL 90
Database: fruitfly
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 24,830,863
Number of sequences in database: 52,641
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,042,309
Number of Sequences: 52641
Number of extensions: 303411
Number of successful extensions: 776
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 28
length of query: 175
length of database: 24,830,863
effective HSP length: 80
effective length of query: 95
effective length of database: 20,619,583
effective search space: 1958860385
effective search space used: 1958860385
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)
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