Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
(175 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical ... 59 1e-09
U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical pr... 56 1e-08
U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical pr... 42 2e-04
AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse trans... 40 7e-04
AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical ... 40 7e-04
AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical ... 34 0.049
AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical ... 30 0.79
Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical pr... 28 3.2
U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective sperm... 28 4.2
Z81549-7|CAB04471.1| 327|Caenorhabditis elegans Hypothetical pr... 27 7.4
U21322-8|AAA62544.1| 662|Caenorhabditis elegans Abnormal embroy... 27 7.4
AL110490-11|CAB54451.1| 894|Caenorhabditis elegans Hypothetical... 27 7.4
Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical pr... 27 9.7
Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical p... 27 9.7
>AF100669-1|AAK39265.1| 931|Caenorhabditis elegans Hypothetical
protein R11E3.3 protein.
Length = 931
Score = 59.3 bits (137), Expect = 1e-09
Identities = 43/141 (30%), Positives = 71/141 (50%), Gaps = 5/141 (3%)
Query: 19 QAGFRPGRSCSDQVLALTTLLERGFN-ENLKSSTVF--VDLTAAYDTVAPGTAVQTT-QA 74
Q GF+P S + V+ +T + G N +N + +DL AA+D V +A
Sbjct: 436 QHGFKPEHSTTTAVIQVTNDIIGGLNMKNPPERAIMACLDLRAAFDKVPTKKLCNDLMEA 495
Query: 75 DPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVP-ET 133
+ KI + + L R R ++ S L G+PQGSV++P LF Y D+P +
Sbjct: 496 QGIEPKIKLWLGNYLHKRLIRTSHDNHWSKWHTLLGGVPQGSVISPNLFTFYLKDMPTQQ 555
Query: 134 LSRKFAYADDLALVAQGRSIE 154
+ +YADD++++A+ + IE
Sbjct: 556 DTMLISYADDMSIIARDKKIE 576
>U58738-4|AAB00604.1| 358|Caenorhabditis elegans Hypothetical
protein F31A9.6 protein.
Length = 358
Score = 56.0 bits (129), Expect = 1e-08
Identities = 31/93 (33%), Positives = 49/93 (52%), Gaps = 8/93 (8%)
Query: 85 IEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPETLSRKFA---YA 141
+ + L+NR FRV +G S + G+PQG+VL+P LF +Y +D+ L K A +A
Sbjct: 50 VNEFLSNRSFRVRIGQTLSSRKFATCGVPQGAVLSPLLFGIYVNDISSILPEKVACKQFA 109
Query: 142 DDLALVAQGRSIETTECHLENDMATLNNYFIRW 174
DD L A T + EN++ + + + W
Sbjct: 110 DDTKLYA-----STPKTESENNLQSALDAVVDW 137
>U58735-1|AAC48148.1| 891|Caenorhabditis elegans Hypothetical
protein F20B4.7 protein.
Length = 891
Score = 41.9 bits (94), Expect = 2e-04
Identities = 37/123 (30%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 18 KQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV---APGTAVQTTQA 74
+QAGFR S D + +L LLE G + + VF+D A+DTV A ++ A
Sbjct: 484 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDTVEHQAIWKSLDEQGA 543
Query: 75 DPLYIKIY-NVIEDALTN-RPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPE 132
D YI + ++ TN PF + ++ + G+ QG ++P LF+ V
Sbjct: 544 DGAYIDLLKECYKNCTTNFTPF------HRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 597
Query: 133 TLS 135
LS
Sbjct: 598 KLS 600
>AF054983-1|AAC72298.1| 1066|Caenorhabditis elegans reverse
transcriptase protein.
Length = 1066
Score = 40.3 bits (90), Expect = 7e-04
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 18 KQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV---APGTAVQTTQA 74
+QAGFR S D + +L LLE G + + VF+D A+D+V A ++ A
Sbjct: 655 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 714
Query: 75 DPLYIKIY-NVIEDALTN-RPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPE 132
D YI + ++ TN PF + ++ + G+ QG ++P LF+ V
Sbjct: 715 DGAYIDLLKECYKNCTTNFTPF------HRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 768
Query: 133 TLS 135
LS
Sbjct: 769 KLS 771
>AF025462-7|AAB71003.1| 805|Caenorhabditis elegans Hypothetical
protein K10F12.5 protein.
Length = 805
Score = 40.3 bits (90), Expect = 7e-04
Identities = 36/123 (29%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 18 KQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTV---APGTAVQTTQA 74
+QAGFR S D + +L LLE G + + VF+D A+D+V A ++ A
Sbjct: 394 EQAGFRRSFSTIDHIHSLQRLLEVGREYQIPLTLVFIDFKKAFDSVEHQAIWKSLDEQGA 453
Query: 75 DPLYIKIY-NVIEDALTN-RPFRVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHDVPE 132
D YI + ++ TN PF + ++ + G+ QG ++P LF+ V
Sbjct: 454 DGAYIDLLKECYKNCTTNFTPF------HRPVAVPVTKGVRQGDPISPNLFSACLEHVFR 507
Query: 133 TLS 135
LS
Sbjct: 508 KLS 510
>AF036692-9|AAB88330.1| 389|Caenorhabditis elegans Hypothetical
protein C44B12.7 protein.
Length = 389
Score = 34.3 bits (75), Expect = 0.049
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 7/80 (8%)
Query: 83 NVIEDALTNRPFRVHLGDNSSLS-RVLNNGLPQGSVLAPTLFNVYTH----DVPETLSRK 137
N D L++R F V + ++ + +++G+P+GSV P LF ++ + VP ++S
Sbjct: 27 NWFHDFLSSRTFSVKVNNHIDPNIHPISSGVPKGSVSGPFLFLIFINSLLLSVPPSISCS 86
Query: 138 FAYADDLALVAQGRS-IETT 156
A+ADDL + + I+TT
Sbjct: 87 -AFADDLKVYSHSPPLIQTT 105
>AF016663-3|AAC70878.1| 1170|Caenorhabditis elegans Hypothetical
protein F21E9.1 protein.
Length = 1170
Score = 30.3 bits (65), Expect = 0.79
Identities = 21/66 (31%), Positives = 37/66 (56%), Gaps = 6/66 (9%)
Query: 86 EDALTNRPFRVHLGDN-SSLSRVLNNGLPQGSVLAPTLFNVYTH----DVPETLSRKFAY 140
++ L NR F V + S S +++G+PQGSV P LF ++ + D+ T++ +
Sbjct: 854 KEFLENRTFSVKINKFVSKNSYPISSGVPQGSVSGPLLFILFINNLLIDLAPTINIS-CF 912
Query: 141 ADDLAL 146
ADD+ +
Sbjct: 913 ADDVKI 918
>Z35637-2|CAA84688.1| 381|Caenorhabditis elegans Hypothetical
protein C03C10.3 protein.
Length = 381
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/35 (40%), Positives = 21/35 (60%)
Query: 9 GVFASIFMPKQAGFRPGRSCSDQVLALTTLLERGF 43
G FASIF K+ G PG + S+++++ L R F
Sbjct: 230 GSFASIFWLKKRGLMPGLTHSNELISRDEGLHRDF 264
>U55363-6|AAA97964.1| 522|Caenorhabditis elegans Defective
spermatogenesis protein39, isoform a protein.
Length = 522
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 129 DVPETLSRKFAYADD-LALVAQGRSIETTECHLENDMATLNNYFIRWR 175
DVPE + D L+L + +S++T +A LNN I+W+
Sbjct: 475 DVPEMVIECLTQKGDRLSLASYAKSLKTNSVESFKAVAALNNPSIKWK 522
>Z81549-7|CAB04471.1| 327|Caenorhabditis elegans Hypothetical
protein F55C9.8 protein.
Length = 327
Score = 27.1 bits (57), Expect = 7.4
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 2/47 (4%)
Query: 41 RGFNENLKSSTVFVDLTAAYDTVAPGTAVQTTQ--ADPLYIKIYNVI 85
RG ++LKS + FV+ A+ D + Q T+ PL IK+ VI
Sbjct: 203 RGEYKSLKSLSSFVEAEASADEIFKDVEYQETEIAKTPLLIKVRRVI 249
>U21322-8|AAA62544.1| 662|Caenorhabditis elegans Abnormal
embroygenesis protein 8 protein.
Length = 662
Score = 27.1 bits (57), Expect = 7.4
Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 1/94 (1%)
Query: 61 DTVAPGTAVQTTQADPLY-IKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLA 119
D V + Q DP + ++ NV EDA PF ++LS ++ P S +
Sbjct: 319 DPVLVDRLINMLQFDPDHAFRLVNVDEDASKRHPFPCPTTFRTALSHYVDICAPVKSHVL 378
Query: 120 PTLFNVYTHDVPETLSRKFAYADDLALVAQGRSI 153
+ T D + K + A++ L R I
Sbjct: 379 KAISEYCTDDTEKEFLNKLSTANEEGLKEYARYI 412
>AL110490-11|CAB54451.1| 894|Caenorhabditis elegans Hypothetical
protein Y48B6A.11 protein.
Length = 894
Score = 27.1 bits (57), Expect = 7.4
Identities = 9/29 (31%), Positives = 16/29 (55%)
Query: 140 YADDLALVAQGRSIETTECHLENDMATLN 168
+ DD+ + S ++ CH+END L+
Sbjct: 27 FPDDVLFTTEASSASSSSCHVENDSRPLS 55
>Z83225-2|CAB05722.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 27 SCSDQVLALTTLLERGFNENL--KSSTVFVDLTAAYDTVAPGTAVQTTQADPL 77
S + V A TLLERG N N + + +D VA + T ADP+
Sbjct: 39 SSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPM 91
>Z81097-19|CAB03177.1| 732|Caenorhabditis elegans Hypothetical
protein F42H11.2 protein.
Length = 732
Score = 26.6 bits (56), Expect = 9.7
Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 2/53 (3%)
Query: 27 SCSDQVLALTTLLERGFNENL--KSSTVFVDLTAAYDTVAPGTAVQTTQADPL 77
S + V A TLLERG N N + + +D VA + T ADP+
Sbjct: 39 SSTTSVDAARTLLERGANVNAIDRDGATPLHYACTHDNVAMAQLLLTFGADPM 91
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.320 0.134 0.392
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,116,239
Number of Sequences: 27539
Number of extensions: 155823
Number of successful extensions: 296
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 288
Number of HSP's gapped (non-prelim): 14
length of query: 175
length of database: 12,573,161
effective HSP length: 77
effective length of query: 98
effective length of database: 10,452,658
effective search space: 1024360484
effective search space used: 1024360484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)
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