GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000196-TA|BGIBMGA000196-PA|IPR000477|RNA-directed DNA
polymerase (Reverse transcriptase)
         (175 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA he...    28   3.0  
At3g15580.1 68416.m01974 autophagy 8i (APG8i) identical to autop...    27   5.3  
At5g63930.1 68418.m08028 leucine-rich repeat transmembrane prote...    27   7.0  

>At3g53110.1 68416.m05853 DEAD/DEAH box helicase, putative RNA
           helicase, Mus musculus, PIR:I49731
          Length = 496

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 13/40 (32%), Positives = 21/40 (52%)

Query: 26  RSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAYDTVAP 65
           + C  QVL  T ++ RGF++   +  V  +L   Y+T  P
Sbjct: 387 KECLTQVLIATDVIARGFDQQRVNLVVNYNLPTKYETGEP 426


>At3g15580.1 68416.m01974 autophagy 8i (APG8i) identical to
           autophagy 8i [Arabidopsis thaliana] GI:19912167;
           contains Pfam profile PF02991: Microtubule associated
           protein 1A/1B, light chain 3; supporting cDNA
           gi|21636957|gb|AF492760.1|
          Length = 115

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)

Query: 95  RVHLGDNSSLSRVLNNGLPQGSVLAPTLFNVYTHD 129
           R+HL    +L   +NN LPQ + L  +++  Y  D
Sbjct: 66  RLHLSPGKALFVFVNNTLPQTAALMDSVYESYKDD 100


>At5g63930.1 68418.m08028 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1102

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 33/135 (24%), Positives = 59/135 (43%), Gaps = 5/135 (3%)

Query: 1   MVSPRISPGVFASIFMPKQAGFRPGRSCSDQVLALTTLLERGFNENLKSSTVFVDLTAAY 60
           +  P ++  +    F P Q+  +PG   S +++A+T  +  G +  L +  V++ +    
Sbjct: 707 LCGPPLNQCIQTQPFAPSQSTGKPGGMRSSKIIAITAAVIGGVSLMLIALIVYL-MRRPV 765

Query: 61  DTVAPGTAVQTTQADPLYIKIYNVIEDALTNRPFRVHLGDNSSLSRVLNNGLPQGSVLAP 120
            TVA  ++ Q  Q   + + IY   ++  T +   V   DN   S V+  G   G+V   
Sbjct: 766 RTVA--SSAQDGQPSEMSLDIYFPPKEGFTFQDL-VAATDNFDESFVVGRG-ACGTVYKA 821

Query: 121 TLFNVYTHDVPETLS 135
            L   YT  V +  S
Sbjct: 822 VLPAGYTLAVKKLAS 836


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,857,356
Number of Sequences: 28952
Number of extensions: 142468
Number of successful extensions: 307
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 305
Number of HSP's gapped (non-prelim): 3
length of query: 175
length of database: 12,070,560
effective HSP length: 76
effective length of query: 99
effective length of database: 9,870,208
effective search space: 977150592
effective search space used: 977150592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)