Silkworm BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000195-TA|BGIBMGA000195-PA|IPR002492|Transposase,
Tc1/Tc3
         (116 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0154 + 14509979-14512033                                         26   8.6  
04_04_0188 - 23433753-23436572                                         26   8.6  

>07_03_0154 + 14509979-14512033
          Length = 684

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 6/39 (15%)

Query: 3   GKVIRHKNE---AFHADCLKRKEKFPVSLMTWMTWGCMS 38
           G V+ H+     A + DCL R  +FP     W+ WG +S
Sbjct: 561 GIVLTHQQSEIMAANGDCLVRPSRFP---PRWLDWGDVS 596


>04_04_0188 - 23433753-23436572
          Length = 939

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 5/40 (12%)

Query: 54  VCGWFYQVCE-VSKPFGREFSTLYSVTQATRFLHFSTGWC 92
           VCG  ++  + VSK F RE      V  A RF HFS G C
Sbjct: 898 VCGDCHEFTKLVSKLFEREIV----VRDANRFHHFSGGTC 933


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.327    0.140    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,731,850
Number of Sequences: 37544
Number of extensions: 133124
Number of successful extensions: 279
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 2
length of query: 116
length of database: 14,793,348
effective HSP length: 73
effective length of query: 43
effective length of database: 12,052,636
effective search space: 518263348
effective search space used: 518263348
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)