Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000195-TA|BGIBMGA000195-PA|IPR002492|Transposase,
Tc1/Tc3
         (116 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52858| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   1.7  
SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)           28   2.2  
SB_32038| Best HMM Match : ILVD_EDD (HMM E-Value=3.50002e-41)          27   3.9  
SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)                        26   8.9  

>SB_52858| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 180

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 15/70 (21%), Positives = 31/70 (44%), Gaps = 2/70 (2%)

Query: 11 EAFHADCLKRKEKFPVSLMTWMTWGCMSAKGVGGILWKILWYAVCGWFYQVCEVSKPFGR 70
          + +   CL    +  ++ +  ++W   +A+G  G  W        G++      ++PFG+
Sbjct: 12 DTYGEKCLDASYQNAINSLRNVSWDSSAAEG--GRQWTYQTCTEFGFYQTTDSDNQPFGK 69

Query: 71 EFSTLYSVTQ 80
           F   YS+ Q
Sbjct: 70 RFPLKYSIQQ 79


>SB_24692| Best HMM Match : Disintegrin (HMM E-Value=7.6e-23)
          Length = 1592

 Score = 27.9 bits (59), Expect = 2.2
 Identities = 13/35 (37%), Positives = 15/35 (42%)

Query: 67   PFGREFSTLYSVTQATRFLHFSTGWCFLPYCKDNN 101
            PF  +FS L      T+  HF  GW  L     NN
Sbjct: 1107 PFNTDFSILGESEDITQSRHFQGGWTLLVTSTKNN 1141


>SB_32038| Best HMM Match : ILVD_EDD (HMM E-Value=3.50002e-41)
          Length = 508

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 38  SAKGVGGILWKILWYAVCGWFYQVCEVSK 66
           +A G+G   WK+  YA   + +  C VSK
Sbjct: 357 AADGIGDTTWKVRAYARVRFLFTSCAVSK 385


>SB_3479| Best HMM Match : PAH (HMM E-Value=4.7)
          Length = 222

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 10/35 (28%), Positives = 20/35 (57%)

Query: 49  ILWYAVCGWFYQVCEVSKPFGREFSTLYSVTQATR 83
           + +Y VC  +Y+VC+V +   +   ++  V Q+ R
Sbjct: 140 VRYYKVCVRYYKVCQVLQSVHQVLQSVRQVLQSVR 174


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.327    0.140    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,291,358
Number of Sequences: 59808
Number of extensions: 147643
Number of successful extensions: 326
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 304
Number of HSP's gapped (non-prelim): 23
length of query: 116
length of database: 16,821,457
effective HSP length: 73
effective length of query: 43
effective length of database: 12,455,473
effective search space: 535585339
effective search space used: 535585339
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)