Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000195-TA|BGIBMGA000195-PA|IPR002492|Transposase,
Tc1/Tc3
         (116 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g19260.1 68416.m02443 longevity-assurance (LAG1) family prote...    28   1.4  
At3g10140.1 68416.m01216 recA family protein contains Pfam profi...    27   3.2  
At4g28230.1 68417.m04045 expressed protein                             26   7.3  
At4g05616.1 68417.m00870 hypothetical protein                          25   9.6  
At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containi...    25   9.6  

>At3g19260.1 68416.m02443 longevity-assurance (LAG1) family protein
           similar to Alternaria stem canker resistance protein
           (ASC1) [Lycopersicon esculentum] GI:7688742; contains
           Pfam profile PF03798: Longevity-assurance protein (LAG1)
          Length = 296

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 10/31 (32%), Positives = 17/31 (54%)

Query: 46  LWKILWYAVCGWFYQVCEVSKPFGREFSTLY 76
           LWK+L+YA C +F       +P+ R+    +
Sbjct: 77  LWKLLYYAACDFFVLQVIYHEPWARDIKLYF 107


>At3g10140.1 68416.m01216 recA family protein contains Pfam profile:
           PF00154 recA bacterial DNA recombination protein
          Length = 389

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 12/32 (37%), Positives = 18/32 (56%), Gaps = 2/32 (6%)

Query: 62  CEVSKPFGREFSTLYS--VTQATRFLHFSTGW 91
           CE+  P G  +    S  +TQA R +H+S G+
Sbjct: 210 CELDAPVGERYRDTQSRIMTQALRKIHYSVGY 241


>At4g28230.1 68417.m04045 expressed protein 
          Length = 402

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 10/21 (47%), Positives = 16/21 (76%), Gaps = 1/21 (4%)

Query: 8  HKNEAFHADCLKRKEKFPVSL 28
          H NE+F +DC K + +FP+S+
Sbjct: 42 HLNESFDSDCSK-ENQFPISV 61


>At4g05616.1 68417.m00870 hypothetical protein
          Length = 346

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)

Query: 60  QVCEVSKPFGREFSTLYSV--TQATRFLHFSTGW 91
           Q CE+ K +GR  S  +S+    A +FL    GW
Sbjct: 289 QYCELHKSYGRHTSRCHSLGAKLAAKFLVGEIGW 322


>At1g59720.1 68414.m06720 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 638

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/30 (40%), Positives = 15/30 (50%)

Query: 63  EVSKPFGREFSTLYSVTQATRFLHFSTGWC 92
           EV+K   + F+T   V    RF HF  G C
Sbjct: 603 EVTKLISKVFNTEIIVRDRVRFHHFKDGSC 632


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.327    0.140    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,082,212
Number of Sequences: 28952
Number of extensions: 111780
Number of successful extensions: 271
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 5
length of query: 116
length of database: 12,070,560
effective HSP length: 72
effective length of query: 44
effective length of database: 9,986,016
effective search space: 439384704
effective search space used: 439384704
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 53 (25.4 bits)