GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000195-TA|BGIBMGA000195-PA|IPR002492|Transposase,
Tc1/Tc3
         (116 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27 family|Schi...    25   2.3  
SPBC18A7.02c |||seven transmembrane receptor-like protein|Schizo...    25   2.3  
SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces pomb...    24   5.4  
SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces po...    24   7.1  
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    24   7.1  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    23   9.4  
SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3 |Schizosacc...    23   9.4  

>SPAC19B12.01 ||SPAC4F10.21|TPR repeat protein, TTC27
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 817

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 13/36 (36%), Positives = 17/36 (47%), Gaps = 2/36 (5%)

Query: 3   GKVIRHKNEAFHA-DCLKRKEKF-PVSLMTWMTWGC 36
           GK    K +   A +C     K  P+S  TW T+GC
Sbjct: 528 GKYYYKKGDLLQAMNCFNESLKINPLSYPTWFTYGC 563


>SPBC18A7.02c |||seven transmembrane receptor-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 457

 Score = 25.4 bits (53), Expect = 2.3
 Identities = 8/12 (66%), Positives = 9/12 (75%)

Query: 46  LWKILWYAVCGW 57
           LWKI WY + GW
Sbjct: 390 LWKIRWYFLDGW 401


>SPAC56F8.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 394

 Score = 24.2 bits (50), Expect = 5.4
 Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)

Query: 9   KNEAFHADCLKRKEKFPVSL--MTWMTWG 35
           + EA H +C +RK +  +S    T  TWG
Sbjct: 323 EKEAIHEECRQRKRRTTISRDNSTRSTWG 351


>SPCC191.11 |inv1||beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 581

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 17/66 (25%), Positives = 28/66 (42%), Gaps = 2/66 (3%)

Query: 48  KILWYAVCGWFYQVCEVSKPFGREFSTLYSVTQATRFLHFST-GWCFLPY-CKDNNDVTI 105
           K++W      +  +  +S+ +G  F + Y +   T    FST G+  L Y C     V +
Sbjct: 230 KVIWDFDANRWVMIVAMSQNYGIAFYSSYDLIHWTELSVFSTSGYLGLQYECPGMARVPV 289

Query: 106 GGKHPY 111
            G   Y
Sbjct: 290 EGTDEY 295


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 23.8 bits (49), Expect = 7.1
 Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 6/66 (9%)

Query: 32  MTWGCMSAKGVGGILWKILWYAVCGWFYQVCEVSKPFGREFSTLYSVTQATRFLHFSTGW 91
           +++  MS  GV GIL K++W      +Y +     PF   +  LY     +R L F   +
Sbjct: 325 LSYPVMSFYGVRGILLKLIWNIYTFVYYGL-----PFFAVY-RLYKQAGESRKLGFEAKY 378

Query: 92  CFLPYC 97
             L  C
Sbjct: 379 SLLRTC 384


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/38 (26%), Positives = 15/38 (39%)

Query: 68  FGREFSTLYSVTQATRFLHFSTGWCFLPYCKDNNDVTI 105
           F     TL+   +     + S  W F+PY   N  + I
Sbjct: 2   FAYNHKTLHVCLRLISLRNCSNTWTFVPYANSNRGLNI 39


>SPCC1223.01 ||SPCC285.18|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 732

 Score = 23.4 bits (48), Expect = 9.4
 Identities = 10/26 (38%), Positives = 14/26 (53%)

Query: 15  ADCLKRKEKFPVSLMTWMTWGCMSAK 40
           A+ L+ KEK    L  W  W  ++AK
Sbjct: 560 ANLLENKEKSRELLEAWQEWKILNAK 585


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.327    0.140    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 579,073
Number of Sequences: 5004
Number of extensions: 20576
Number of successful extensions: 41
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 38
Number of HSP's gapped (non-prelim): 7
length of query: 116
length of database: 2,362,478
effective HSP length: 64
effective length of query: 52
effective length of database: 2,042,222
effective search space: 106195544
effective search space used: 106195544
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 48 (23.4 bits)