GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000195-TA|BGIBMGA000195-PA|IPR002492|Transposase,
Tc1/Tc3
         (116 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY121707-1|AAM52034.1|  301|Drosophila melanogaster RH58440p pro...    27   7.9  
AE014298-841|AAF46120.2|  261|Drosophila melanogaster CG4660-PA ...    27   7.9  

>AY121707-1|AAM52034.1|  301|Drosophila melanogaster RH58440p
           protein.
          Length = 301

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 15  ADCLKRKEKFPVSLMTWMTWGCMSAKGV 42
           A CLK K   P  L  W+ +  MS+K +
Sbjct: 270 AHCLKLKPSLPPELAKWIEYNDMSSKNL 297


>AE014298-841|AAF46120.2|  261|Drosophila melanogaster CG4660-PA
           protein.
          Length = 261

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 15  ADCLKRKEKFPVSLMTWMTWGCMSAKGV 42
           A CLK K   P  L  W+ +  MS+K +
Sbjct: 230 AHCLKLKPSLPPELAKWIEYNDMSSKNL 257


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.327    0.140    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,007,864
Number of Sequences: 52641
Number of extensions: 206834
Number of successful extensions: 349
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 347
Number of HSP's gapped (non-prelim): 2
length of query: 116
length of database: 24,830,863
effective HSP length: 76
effective length of query: 40
effective length of database: 20,830,147
effective search space: 833205880
effective search space used: 833205880
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 56 (26.6 bits)