GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000195-TA|BGIBMGA000195-PA|IPR002492|Transposase,
Tc1/Tc3
         (116 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical...    29   1.1  
Z22177-6|CAA80150.1|  576|Caenorhabditis elegans Hypothetical pr...    28   1.9  
AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.      28   1.9  
AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical...    27   2.5  
Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical pr...    26   5.9  
Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical pr...    26   5.9  
U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical pr...    26   7.7  

>AF016450-12|AAB65989.1|  278|Caenorhabditis elegans Hypothetical
           protein B0238.10 protein.
          Length = 278

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/42 (30%), Positives = 22/42 (52%)

Query: 60  QVCEVSKPFGREFSTLYSVTQATRFLHFSTGWCFLPYCKDNN 101
           Q+ ++ +   ++ S  YS+     FLH    +CFL Y + NN
Sbjct: 105 QINDIMRLITKDLSEPYSIYTYRYFLHNWPEYCFLAYDQTNN 146


>Z22177-6|CAA80150.1|  576|Caenorhabditis elegans Hypothetical
           protein ZK512.6 protein.
          Length = 576

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 28  LMTWMTWGC-MSAKGVGGILWKILWYAV 54
           L+++++W       GV G++W ILW+ V
Sbjct: 233 LVSYVSWAAPFYLYGVCGVIWAILWFCV 260


>AF095787-1|AAC64972.1|  563|Caenorhabditis elegans EAT-4 protein.
          Length = 563

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 28  LMTWMTWGC-MSAKGVGGILWKILWYAV 54
           L+++++W       GV G++W ILW+ V
Sbjct: 220 LVSYVSWAAPFYLYGVCGVIWAILWFCV 247


>AL117202-24|CAD27612.1|  565|Caenorhabditis elegans Hypothetical
           protein Y47D3A.30 protein.
          Length = 565

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 28  LMTWMTWGCMSAKGVGGILW-KILWYAVCGWFYQVC 62
           L  W  + C+   G+G ++  +IL  ++ GW Y VC
Sbjct: 189 LKEWYYYNCVFQLGLGILMIPEILTSSLSGWHYSVC 224


>Z99278-7|CAB16488.1|  382|Caenorhabditis elegans Hypothetical
           protein Y53C12B.6 protein.
          Length = 382

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 3   GKVIRHKNEAFHADCLKRKEKFPVSLM 29
           G +I H++ A+  DC  R+E   V  M
Sbjct: 106 GSIITHRDVAYQIDCFYREENSRVETM 132


>Z81511-1|CAB04166.1|  192|Caenorhabditis elegans Hypothetical
           protein F21F12.1 protein.
          Length = 192

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 9/32 (28%), Positives = 14/32 (43%)

Query: 27  SLMTWMTWGCMSAKGVGGILWKILWYAVCGWF 58
           ++ +W  W C  A  +    W+  W A C  F
Sbjct: 105 AVTSWENWLCFLATNLSPAQWQGYWLAHCALF 136


>U41023-1|AAA82340.1|  569|Caenorhabditis elegans Hypothetical
           protein F53H8.3 protein.
          Length = 569

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)

Query: 92  CFLPYCKDNNDVTIGGKH 109
           C LP+C ++   T+G KH
Sbjct: 196 CILPFCPESPKYTLGTKH 213


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.327    0.140    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,127,286
Number of Sequences: 27539
Number of extensions: 112397
Number of successful extensions: 275
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 269
Number of HSP's gapped (non-prelim): 7
length of query: 116
length of database: 12,573,161
effective HSP length: 72
effective length of query: 44
effective length of database: 10,590,353
effective search space: 465975532
effective search space used: 465975532
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.7 bits)
S2: 54 (25.8 bits)