GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000195-TA|BGIBMGA000195-PA|IPR002492|Transposase,
Tc1/Tc3
         (116 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   3.7  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   3.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   3.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        21   4.9  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        21   4.9  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        21   4.9  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          20   8.6  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 2   KGKVIRHKNEAFHAD 16
           +G+ I HK++ FH D
Sbjct: 647 EGRRIFHKSDTFHKD 661


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 26  VSLMTWMTWGCMSAKGVG 43
           +S   W  WG +   G+G
Sbjct: 610 LSSAVWFAWGVLLNSGIG 627


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 7/15 (46%), Positives = 11/15 (73%)

Query: 2   KGKVIRHKNEAFHAD 16
           +G+ I HK++ FH D
Sbjct: 615 EGRRIFHKSDTFHKD 629


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 8   HKNEAFHADCLKRKEKFPVSLMTWMTW 34
           H   A + D ++R       ++ W TW
Sbjct: 365 HLKNAKYLDVIERNSGATDKIIRWCTW 391


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 8   HKNEAFHADCLKRKEKFPVSLMTWMTW 34
           H   A + D ++R       ++ W TW
Sbjct: 365 HLKNAKYLDVIERNSGATDKIIRWCTW 391


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 20.6 bits (41), Expect = 4.9
 Identities = 7/27 (25%), Positives = 12/27 (44%)

Query: 8   HKNEAFHADCLKRKEKFPVSLMTWMTW 34
           H   A + D ++R       ++ W TW
Sbjct: 365 HLKNAKYLDVIERNSGATDKIIRWCTW 391


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 63  EVSKPFGREFSTLYSVTQ 80
           + SK FG   STLY + +
Sbjct: 486 KASKAFGIPSSTLYKIAR 503


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.327    0.140    0.506 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,797
Number of Sequences: 429
Number of extensions: 1418
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 116
length of database: 140,377
effective HSP length: 50
effective length of query: 66
effective length of database: 118,927
effective search space:  7849182
effective search space used:  7849182
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (21.2 bits)
S2: 39 (19.8 bits)