Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000194-TA|BGIBMGA000194-PA|undefined
         (271 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    29   0.71 
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni...    27   2.9  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    26   6.6  
SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit |Schiz...    25   8.7  

>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 29.1 bits (62), Expect = 0.71
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 5/74 (6%)

Query: 156 DMFAAYALRTNELRLGHNNMPITKQDGVH---KSFPVSKYGLSGAHHVLLE--GTSFPPE 210
           D++  +      L   ++N PI++QD  H     FP  +  L G +H   +   T+ P  
Sbjct: 65  DLYFPFRKGNESLMTENSNYPISEQDTQHNHISDFPSRRMQLDGMNHSNNDTYSTAIPFS 124

Query: 211 RRSSIVQSLGAMTA 224
           + SS+  ++G  ++
Sbjct: 125 KDSSVFDAVGQQSS 138


>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
           Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 960

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 10/26 (38%), Positives = 19/26 (73%)

Query: 9   PRIDLDAVRKYKCMKSIVEAYYSILS 34
           PR DL+A++ Y+  K I++++ S L+
Sbjct: 741 PRSDLEALKLYRTRKEILDSFISTLN 766


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 16  VRKYKCMKSIVEAYYSILSKV 36
           +++  C+K  + AYYS+LS+V
Sbjct: 533 LKQISCLKQSLVAYYSVLSEV 553


>SPAC10F6.01c ||SPAC4C5.05c|sulfite reductase beta subunit
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1473

 Score = 25.4 bits (53), Expect = 8.7
 Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 4/37 (10%)

Query: 71   GNHIVSII----FTIHNVCRQEVKNTSTNMIKKTATT 103
            GNH + I     F  H V ++ ++NT  N++K   TT
Sbjct: 985  GNHTLKITTRQTFQWHGVLKKNLRNTIRNIVKVFLTT 1021


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,150,469
Number of Sequences: 5004
Number of extensions: 44353
Number of successful extensions: 92
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 89
Number of HSP's gapped (non-prelim): 5
length of query: 271
length of database: 2,362,478
effective HSP length: 72
effective length of query: 199
effective length of database: 2,002,190
effective search space: 398435810
effective search space used: 398435810
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 53 (25.4 bits)