Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000194-TA|BGIBMGA000194-PA|undefined
         (271 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)                   31   1.3  
SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.4  
SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 27/93 (29%), Positives = 42/93 (45%), Gaps = 4/93 (4%)

Query: 116 VDNKFIKDKWVEILKGNGLEYKDFSTTDNTNWYGTMGPYVDMFAAYALRTNELRLGHNNM 175
           VD++   D  V   KGN L+YKD S  +  ++ GT G  V        R+ EL   ++++
Sbjct: 289 VDSRLPHDSEVTQGKGNALDYKDSSYGEGGSFSGTEGGRVKDNDDVNTRSQELT--NSDL 346

Query: 176 PITKQDGVHK--SFPVSKYGLSGAHHVLLEGTS 206
              ++D  H+  S   S    +  H  L   TS
Sbjct: 347 QAERKDVKHQPMSLDPSNIRSNNNHQSLSSSTS 379


>SB_31403| Best HMM Match : PAN (HMM E-Value=2.7e-18)
          Length = 1051

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 8/66 (12%)

Query: 67  NITVGNHIVSIIFTIHNVCRQEVKNTST----NMIKKTATTSFNIHFRGNDYLVDNKFIK 122
           N  +  H++  I T   VCR   K+ ST    N I++      N HFRGN  +  ++   
Sbjct: 860 NSMLQGHVIDTITTTEEVCRMTCKSNSTCYSINYIRQKLEE--NQHFRGN--VKSSRVTN 915

Query: 123 DKWVEI 128
           +K+V I
Sbjct: 916 EKYVGI 921


>SB_13733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1455

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 12/37 (32%), Positives = 22/37 (59%)

Query: 125  WVEILKGNGLEYKDFSTTDNTNWYGTMGPYVDMFAAY 161
            ++++LK   +EY+DFS    T W+  +    D+FA +
Sbjct: 1378 FIDVLKFELIEYRDFSYCVLTAWFLKLRRSYDLFALF 1414


>SB_14256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3176

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 118 NKFIKDKWVEILKGNGLEYKDFSTTDN 144
           NK  KDKW+E   G G E+ DFS+  +
Sbjct: 161 NKLTKDKWLEEEVGLG-EFNDFSSVSD 186


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,237,548
Number of Sequences: 59808
Number of extensions: 302304
Number of successful extensions: 570
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 5
length of query: 271
length of database: 16,821,457
effective HSP length: 81
effective length of query: 190
effective length of database: 11,977,009
effective search space: 2275631710
effective search space used: 2275631710
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)