Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000194-TA|BGIBMGA000194-PA|undefined
         (271 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g47580.1 68418.m05873 expressed protein strong similarity to ...    28   5.8  
At5g44950.1 68418.m05513 F-box family protein contains F-box dom...    28   7.7  
At5g23790.1 68418.m02793 galactinol synthase, putative similar t...    28   7.7  
At1g28030.1 68414.m03432 oxidoreductase, 2OG-Fe(II) oxygenase fa...    28   7.7  

>At5g47580.1 68418.m05873 expressed protein strong similarity to
           unknown protein (pir||E71441)
          Length = 748

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/53 (28%), Positives = 24/53 (45%), Gaps = 5/53 (9%)

Query: 80  TIHNVCRQEVKNTSTNMIKKTATTSFNIHFRGNDYLVD-----NKFIKDKWVE 127
           T + +   E + + +N   +    SF +H  G D LVD     N+   D W+E
Sbjct: 394 TSNTITHSESEKSDSNPSSRQDLASFVLHLEGEDPLVDVMVRSNREATDHWIE 446


>At5g44950.1 68418.m05513 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 438

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/44 (22%), Positives = 24/44 (54%), Gaps = 2/44 (4%)

Query: 104 SFNIHFRGNDYLVDNKFIKDKWVEILKGNGLEYKDFSTTDNTNW 147
           +F +++  N Y + ++F+   W+  +   G+++ D + TD   W
Sbjct: 77  NFKLNYESNLYYLMDRFVP--WIATVVDRGIQHLDVTATDCPPW 118


>At5g23790.1 68418.m02793 galactinol synthase, putative similar to
           galactinol synthase, isoform GolS-1 GI:5608497 from
           [Ajuga reptans]; contains Pfam profile: PF01501 glycosyl
           transferase family 8
          Length = 333

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/28 (39%), Positives = 18/28 (64%)

Query: 117 DNKFIKDKWVEILKGNGLEYKDFSTTDN 144
           D K +  KW EI + + L+YK+F  T++
Sbjct: 279 DIKMLVKKWWEIYEDSSLDYKNFVETES 306


>At1g28030.1 68414.m03432 oxidoreductase, 2OG-Fe(II) oxygenase
           family protein similar to GS-AOP loci [GI:16118889,
           GI:16118887, GI:16118891, GI:16118893]; contains PF03171
           2OG-Fe(II) oxygenase superfamily domain
          Length = 322

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 43/163 (26%), Positives = 65/163 (39%), Gaps = 18/163 (11%)

Query: 78  IFTIHNVCRQEVKNTSTNMIKKTATTSFNIHFRGNDYLVDNKFIKDKWVEILKGNGLEYK 137
           IF   NV     K    N+  +T T      F    Y+ ++    +K  ++LK  G+   
Sbjct: 125 IFVGKNVQSFAEKLIELNLTVRTMTLE---SFGLEKYMEEHLNAANKHFQLLKYKGIS-- 179

Query: 138 DFSTTDNTNWYGTMGPYVDMFAAYALRTNELRLGHNNMPITKQDG-----VHKSFPVSKY 192
           D +T +   +Y    P++D      L  N+   G   + I  +DG     V  S   S  
Sbjct: 180 DDNTENKIGFY----PHIDRHFLTILCQNDAVDG---LEIKTKDGEEWIKVKPSQASSFI 232

Query: 193 GLSGAH-HVLLEGTSFPPERRSSIVQSLGAMTAWLCMLRSDGI 234
            ++GA  HVLL G  FPP  R  I        A L  +  +G+
Sbjct: 233 VMAGASLHVLLNGGVFPPLHRVVITGKKDRYVAALFTIPKEGV 275


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,841,401
Number of Sequences: 28952
Number of extensions: 221117
Number of successful extensions: 428
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 427
Number of HSP's gapped (non-prelim): 4
length of query: 271
length of database: 12,070,560
effective HSP length: 80
effective length of query: 191
effective length of database: 9,754,400
effective search space: 1863090400
effective search space used: 1863090400
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)