GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000194-TA|BGIBMGA000194-PA|undefined
         (271 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          27   0.15 
AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2 ...    21   9.8  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 27.1 bits (57), Expect = 0.15
 Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 5/40 (12%)

Query: 116 VDNKFIKDKWVEILKGNGLE-YKD----FSTTDNTNWYGT 150
           + NK+ + K V  +  NGL+ Y D    FS+ +NTNW  T
Sbjct: 774 IPNKYYEAKQVYRIGSNGLQCYIDRNVVFSSQNNTNWVPT 813


>AJ223614-1|CAA11490.1|  301|Tribolium castaneum orthodenticle-2
           protein protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/22 (36%), Positives = 12/22 (54%)

Query: 131 GNGLEYKDFSTTDNTNWYGTMG 152
           GNGLE     + D ++W+   G
Sbjct: 276 GNGLETSWGKSRDESSWFYNSG 297


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,189
Number of Sequences: 317
Number of extensions: 2110
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 2
length of query: 271
length of database: 114,650
effective HSP length: 56
effective length of query: 215
effective length of database: 96,898
effective search space: 20833070
effective search space used: 20833070
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)