GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000194-TA|BGIBMGA000194-PA|undefined
         (271 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119...    29   3.0  
09_06_0185 - 21422946-21423671,21423746-21423924,21424004-214242...    28   7.0  

>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
            23812210-23812285,23813064-23813072,23813243-23813335,
            23813578-23813581,23813780-23814703,23814926-23815909,
            23816073-23816118,23816376-23816951,23817253-23817798,
            23817820-23818416
          Length = 2252

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 3/63 (4%)

Query: 78   IFTIHNVCRQEVKNTSTNMIKKTATTSFNIHFRGNDYLVDNKFIKDKWVEILK--GNGLE 135
            IF   ++C   +K+ ST +IKK       I    +  L D    +++WV I    G+GLE
Sbjct: 1407 IFGSEDLCPVNLKDVSTEIIKKCGGLPLAIITMAS-LLADKSDRREEWVRIRNSIGSGLE 1465

Query: 136  YKD 138
             K+
Sbjct: 1466 KKN 1468


>09_06_0185 -
           21422946-21423671,21423746-21423924,21424004-21424241,
           21424319-21424759
          Length = 527

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 136 YKDFSTTDNTNWYGTMGPYVDMFAAYALR 164
           + DF   D+ +WY      VD  AAYA R
Sbjct: 62  FSDFPWPDSVDWYPRHDQVVDYLAAYARR 90


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,980,788
Number of Sequences: 37544
Number of extensions: 259597
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 402
Number of HSP's gapped (non-prelim): 2
length of query: 271
length of database: 14,793,348
effective HSP length: 81
effective length of query: 190
effective length of database: 11,752,284
effective search space: 2232933960
effective search space used: 2232933960
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)