GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000194-TA|BGIBMGA000194-PA|undefined
         (271 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical p...    28   6.2  
AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.     28   6.2  

>Z71262-10|CAA95816.4|  436|Caenorhabditis elegans Hypothetical
           protein F22D6.12 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 86  RQEVKNTSTNMIKKTATTSFNIHFRGNDYLVDNKFIKDKWVEILKGNGLEYK-DFSTTD- 143
           +QE KN S   +K   TT+       + YL+DN  I      ILKG     K D    D 
Sbjct: 30  KQEDKNVSKQFLKSICTTA------SDSYLLDNMEINCS--NILKGYKTNEKLDIMHLDI 81

Query: 144 -NTNWYGTMGPYVDMFAAYALRTNELRLGHNNMPITKQDGVHKSFPVSKYGLSGAHHVLL 202
                +        +   +   TN +     + P++    V+K  P   + LS  +H   
Sbjct: 82  IEEQLFSCTNKCQTLKTLFRFNTNPMSAEEKHFPLSYGMLVYKDLPQVLFLLSSIYHPQN 141

Query: 203 EGTSFPPERRSSIVQSL 219
           E      E  + I Q+L
Sbjct: 142 EYCIAVGENSAPIFQNL 158


>AY037801-1|AAK94766.1|  436|Caenorhabditis elegans GLY-19 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 34/137 (24%), Positives = 51/137 (37%), Gaps = 11/137 (8%)

Query: 86  RQEVKNTSTNMIKKTATTSFNIHFRGNDYLVDNKFIKDKWVEILKGNGLEYK-DFSTTD- 143
           +QE KN S   +K   TT+       + YL+DN  I      ILKG     K D    D 
Sbjct: 30  KQEDKNVSKQFLKSICTTA------SDSYLLDNMEINCS--NILKGYKTNEKLDIMHLDI 81

Query: 144 -NTNWYGTMGPYVDMFAAYALRTNELRLGHNNMPITKQDGVHKSFPVSKYGLSGAHHVLL 202
                +        +   +   TN +     + P++    V+K  P   + LS  +H   
Sbjct: 82  IEEQLFSCTNKCQTLKTLFRFNTNPMSAEEKHFPLSYGMLVYKDLPQVLFLLSSIYHPQN 141

Query: 203 EGTSFPPERRSSIVQSL 219
           E      E  + I Q+L
Sbjct: 142 EYCIAVGENSAPIFQNL 158


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.135    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,139,852
Number of Sequences: 27539
Number of extensions: 233393
Number of successful extensions: 522
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 520
Number of HSP's gapped (non-prelim): 2
length of query: 271
length of database: 12,573,161
effective HSP length: 80
effective length of query: 191
effective length of database: 10,370,041
effective search space: 1980677831
effective search space used: 1980677831
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 59 (27.9 bits)