Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA000193-TA|BGIBMGA000193-PA|IPR013106|Immunoglobulin
V-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype
(202 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.87
SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30) 31 0.87
SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.5
SB_28081| Best HMM Match : ig (HMM E-Value=2e-08) 29 2.0
SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_42222| Best HMM Match : ig (HMM E-Value=2.1e-17) 29 2.0
SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.0
SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45) 29 3.5
SB_56444| Best HMM Match : fn3 (HMM E-Value=1.2e-21) 29 3.5
SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.5
SB_8817| Best HMM Match : I-set (HMM E-Value=0) 29 3.5
SB_10900| Best HMM Match : I-set (HMM E-Value=0) 28 4.6
SB_47306| Best HMM Match : I-set (HMM E-Value=0) 28 4.6
SB_47305| Best HMM Match : I-set (HMM E-Value=0) 28 4.6
SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35) 28 6.1
SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_18653| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.1
SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08) 27 8.1
SB_8818| Best HMM Match : I-set (HMM E-Value=0) 27 8.1
>SB_24434| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1194
Score = 30.7 bits (66), Expect = 0.87
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 125 YTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYEC 159
Y N+++ DD L++K V RDNG Y+C
Sbjct: 317 YRNNQQLADSDKIAIDDGNLRVKNVSDRDNGVYQC 351
>SB_12208| Best HMM Match : ig (HMM E-Value=6.9e-30)
Length = 474
Score = 30.7 bits (66), Expect = 0.87
Identities = 26/98 (26%), Positives = 41/98 (41%), Gaps = 8/98 (8%)
Query: 76 PSINNTQEDVLAQLGAVAFLHCPVRNLGER--GVSWVRRRDWHIISSGVLMYTNDERFQV 133
P + V +LG+ + C N+ W R + +T D
Sbjct: 227 PRVKAKDHYVATRLGSTVSISCTASNVNLEFDTTKWTRNGTEASVQQSQRFHTRD----- 281
Query: 134 LHS-EGSDDWILQIKYVQKRDNGTYECQVSTCQLSGTT 170
L+S EGS + L IK V+ +D G Y+C V+T G++
Sbjct: 282 LYSYEGSMESTLIIKGVRIQDFGCYKCTVATSNGLGSS 319
>SB_9034| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1756
Score = 29.9 bits (64), Expect = 1.5
Identities = 15/55 (27%), Positives = 23/55 (41%)
Query: 76 PSINNTQEDVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMYTNDER 130
P I + Q + G AFLHC V+W+R D ++++N R
Sbjct: 73 PVITSKQSSLTFNNGGQAFLHCNATGYPTPNVTWIRLGDGRQWLGSPIVFSNISR 127
>SB_28081| Best HMM Match : ig (HMM E-Value=2e-08)
Length = 293
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 68 SLDALHRE--PSINNTQEDVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMY 125
++D++ E P I + Q + G AFLHC V+W+R D +++
Sbjct: 110 TIDSIEIEGIPVITSKQSSLTFNNGDQAFLHCNATGYPTPNVTWIRLGDGRQWLGSPIVF 169
Query: 126 TNDER 130
+N R
Sbjct: 170 SNISR 174
>SB_799| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 370
Score = 29.5 bits (63), Expect = 2.0
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 5/62 (8%)
Query: 84 DVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMYTNDE-RFQVLHSEGSDDW 142
D + GA+A H P+R + RG RR W LM++ D + + S+ +DW
Sbjct: 49 DKITCSGAIADKHAPLRTMRVRG----RRSPWITSELKDLMHSRDVLKIKATESKDPNDW 104
Query: 143 IL 144
L
Sbjct: 105 AL 106
>SB_42222| Best HMM Match : ig (HMM E-Value=2.1e-17)
Length = 364
Score = 29.5 bits (63), Expect = 2.0
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Query: 68 SLDALHRE--PSINNTQEDVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMY 125
++D++ E P I + Q + G AFLHC V+W+R D +++
Sbjct: 96 TIDSIEIEGIPVITSKQSSLTFNNGDQAFLHCNATGYPTPNVTWIRLGDGRQWLGSPIVF 155
Query: 126 TNDER 130
+N R
Sbjct: 156 SNISR 160
>SB_41623| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1604
Score = 29.5 bits (63), Expect = 2.0
Identities = 27/88 (30%), Positives = 41/88 (46%), Gaps = 11/88 (12%)
Query: 75 EPSINNTQEDVLAQLGAVAFLHCPVRNLGERG-VSWVRRRDWHIISSGVLMYTNDERFQV 133
+P I T + GA L C V+ + G V+W + D ++ GV YT+D+
Sbjct: 120 KPRILVTPSQLSVVEGASVTLTCTVQASSQVGAVTWYK--DATQLADGVQDYTSDDS--- 174
Query: 134 LHSEGSDDWILQIKYVQKRDNGTYECQV 161
LH L++ V K + G YEC+V
Sbjct: 175 LHKN-----TLRLTNVGKDEGGMYECRV 197
>SB_50270| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 857
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 2/49 (4%)
Query: 128 DERFQVLHSEGSDDWILQIKYVQKRDNGTYECQVSTCQLSGTTEPSPTV 176
++ +VL + D+ +L K+ N Y + TC SG+T P PTV
Sbjct: 811 EKLLRVLGTRPEDEIVL--KFWMTGLNQQYRSHLLTCSSSGSTTPPPTV 857
>SB_28941| Best HMM Match : PI3_PI4_kinase (HMM E-Value=2.8026e-45)
Length = 2022
Score = 28.7 bits (61), Expect = 3.5
Identities = 11/25 (44%), Positives = 15/25 (60%)
Query: 51 LAELAGVVPAWRELWLGSLDALHRE 75
+ EL + W ELWLGSL H++
Sbjct: 1073 IQELRRITLLWEELWLGSLIQTHQD 1097
>SB_56444| Best HMM Match : fn3 (HMM E-Value=1.2e-21)
Length = 651
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 122 VLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYECQ 160
V YT R+Q+ + GS L + +Q+ +G YEC+
Sbjct: 258 VTWYTKTSRYQLANGIGSAT--LSLSKIQRNQSGVYECR 294
>SB_54662| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 673
Score = 28.7 bits (61), Expect = 3.5
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 121 GVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYEC 159
G L+ TND R + EGS L + Y Q D G Y+C
Sbjct: 227 GRLISTNDSRSEANTREGS----LVMPYFQPEDQGDYQC 261
>SB_8817| Best HMM Match : I-set (HMM E-Value=0)
Length = 2526
Score = 28.7 bits (61), Expect = 3.5
Identities = 15/33 (45%), Positives = 22/33 (66%), Gaps = 1/33 (3%)
Query: 132 QVLHSEGSDDWI-LQIKYVQKRDNGTYECQVST 163
+V+ SE D + L+IK V D+G Y+CQVS+
Sbjct: 334 RVIISEQDDGIVVLRIKDVGAHDSGVYKCQVSS 366
>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
Length = 1642
Score = 28.3 bits (60), Expect = 4.6
Identities = 36/119 (30%), Positives = 41/119 (34%), Gaps = 19/119 (15%)
Query: 76 PSINNTQEDVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMYTNDERFQVLH 135
P I +G A HC VSW D I SG RF V +
Sbjct: 118 PDITQGPTGTSPHVGQEAIFHCIATANPSPSVSWTNPFDQPINRSG--------RFTV-Y 168
Query: 136 SEGSDDWILQIKYVQKRDNGTYECQVSTCQLSG------TTEPSPTVPASTMTCNRQPA 188
GS L I V+K D G Y C VS S T +P P+ T T Q A
Sbjct: 169 GNGS----LVISDVKKADTGYYTCIVSNSFGSAKAFAQLTVLDAPAAPSFTTTPTNQTA 223
>SB_47306| Best HMM Match : I-set (HMM E-Value=0)
Length = 1260
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 130 RFQVLHSEGSDDWILQIKYVQKRDNGTYEC 159
RF ++ EG + L I VQ D+G YEC
Sbjct: 60 RFMLVDDEGEGMFSLLIDDVQPSDSGMYEC 89
>SB_47305| Best HMM Match : I-set (HMM E-Value=0)
Length = 5832
Score = 28.3 bits (60), Expect = 4.6
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 75 EPSINNTQEDVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMYTNDERFQVL 134
+P EDV A + P++ V W R G + RF +
Sbjct: 532 KPEFLRKVEDVTALETEQVWFEIPIQGYPRPIVEWYR---------GTTRIKDGGRFTIS 582
Query: 135 HSEGSDDWILQIKYVQKRDNGTYECQVS 162
SE +D + L I + D+G Y+C S
Sbjct: 583 ESEENDMYSLVIDEARTEDSGPYKCVAS 610
Score = 27.9 bits (59), Expect = 6.1
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 121 GVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYECQVST 163
G M + +++++L S+ L ++ V D GTY C V T
Sbjct: 2771 GTNMLRDGDKYKILKSDDGQTLSLIVENVCGEDAGTYRCVVHT 2813
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
Query: 121 GVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYECQVSTCQLSGTTEPSPTV 176
G + + ++Q+ SEG + L I VQK D G+Y+ V+T Q +T + V
Sbjct: 5088 GSIKLAHGPKYQI--SEGDGAYSLTITGVQKDDTGSYKV-VATNQAGSSTSRAEVV 5140
>SB_39808| Best HMM Match : EGF_CA (HMM E-Value=6.3e-35)
Length = 850
Score = 27.9 bits (59), Expect = 6.1
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 11/85 (12%)
Query: 78 INNTQEDVLAQLGAVAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMYTNDERFQVLHSE 137
I T +DV + G A +C R ++W I ++G D+R+ +L S
Sbjct: 156 IIQTPKDVTIRQGGTAVFNCKARGHPAPHIAWA------IGANGDAPLPTDDRYDLLPSG 209
Query: 138 GSDDWILQIKYVQKRDNGTYECQVS 162
L +K V D G Y C S
Sbjct: 210 A-----LVVKGVNLTDEGMYRCVAS 229
>SB_37849| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1213
Score = 27.9 bits (59), Expect = 6.1
Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 110 VRRRDWHIISSGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNG 155
VRR W+ I + VL YTN ++L +D +L++ Y+Q +G
Sbjct: 651 VRRSQWYHIRAFVLAYTNIALRRMLRRFPRED-VLRMPYMQAVPSG 695
>SB_54054| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4232
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/24 (50%), Positives = 15/24 (62%)
Query: 139 SDDWILQIKYVQKRDNGTYECQVS 162
S+D IL I V + D+GTY C S
Sbjct: 822 SNDTILMITNVSRIDSGTYSCNAS 845
>SB_18653| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 417
Score = 27.9 bits (59), Expect = 6.1
Identities = 12/44 (27%), Positives = 21/44 (47%)
Query: 115 WHIISSGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYE 158
W I + V N ++ + +EG + L +++ Q GTYE
Sbjct: 137 WKINGNPVYASGNSSHYKFMDNEGQPNAALVLEHAQSDQEGTYE 180
>SB_59775| Best HMM Match : DNA_pol_B_2 (HMM E-Value=3e-08)
Length = 1381
Score = 27.5 bits (58), Expect = 8.1
Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 132 QVLHSEGSDDWILQIKYVQKRDNGTYECQVSTCQLSGTTEPS 173
Q H G+ + +L + ++ +RD G + C S CQL PS
Sbjct: 483 QRFHKCGTCEKLLDL-HLPRRDGGAHVCGESKCQLCKEMAPS 523
>SB_8818| Best HMM Match : I-set (HMM E-Value=0)
Length = 2787
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 126 TNDERFQVLHSEGSDDWILQIKYVQKRDNGTYECQ 160
T D+R + H D I+ I V D+GTY+C+
Sbjct: 554 TEDDRIIIDHK--GDSCIVDIMAVTPNDSGTYKCE 586
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.131 0.415
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,033,142
Number of Sequences: 59808
Number of extensions: 250629
Number of successful extensions: 974
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 929
Number of HSP's gapped (non-prelim): 58
length of query: 202
length of database: 16,821,457
effective HSP length: 79
effective length of query: 123
effective length of database: 12,096,625
effective search space: 1487884875
effective search space used: 1487884875
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)
- SilkBase 1999-2023 -