GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000193-TA|BGIBMGA000193-PA|IPR013106|Immunoglobulin
V-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype
         (202 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    26   0.24 
AF265213-1|AAF75277.1|  143|Tribolium castaneum putative cytochr...    23   1.7  
DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase rever...    23   2.2  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   6.8  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 25.8 bits (54), Expect = 0.24
 Identities = 11/33 (33%), Positives = 19/33 (57%)

Query: 135 HSEGSDDWILQIKYVQKRDNGTYECQVSTCQLS 167
           H    ++ +L+I+ V+K D G Y+C +   Q S
Sbjct: 366 HPIDHNEAVLRIESVRKEDKGMYQCFIRNDQES 398



 Score = 21.0 bits (42), Expect = 6.8
 Identities = 8/21 (38%), Positives = 12/21 (57%)

Query: 140 DDWILQIKYVQKRDNGTYECQ 160
           +D  L I  +QK + G Y C+
Sbjct: 756 EDGTLTINNIQKTNEGYYLCE 776


>AF265213-1|AAF75277.1|  143|Tribolium castaneum putative
          cytochrome P450 monooxigenaseCYP4Q3 protein.
          Length = 143

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 69 LDALHREPSINNTQE 83
          L  LHR+P+ NN QE
Sbjct: 47 LGDLHRKPTYNNLQE 61


>DQ372925-1|ABD17350.1|  596|Tribolium castaneum telomerase reverse
           transcriptase protein.
          Length = 596

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 14/64 (21%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 92  VAFLHCPVRNLGERGVSWVRRRDWHIISSGVLMYTNDERFQV-LHSEGSDDWILQIKYVQ 150
           +AF + P++ L    + ++R+ ++    S V       ++ V +  E     +L I  + 
Sbjct: 131 IAFYYKPIKTLNGHEIKFIRKEEYISFESKVFHKLKKMKYLVEVQDEVKPRGVLNI--IP 188

Query: 151 KRDN 154
           K+DN
Sbjct: 189 KQDN 192


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 171 EPSPTVPASTMTCNRQP 187
           +P P +P +   CN  P
Sbjct: 159 DPGPALPPTGFLCNNYP 175


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.318    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 41,047
Number of Sequences: 317
Number of extensions: 1652
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 202
length of database: 114,650
effective HSP length: 54
effective length of query: 148
effective length of database: 97,532
effective search space: 14434736
effective search space used: 14434736
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 41 (20.6 bits)