GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000193-TA|BGIBMGA000193-PA|IPR013106|Immunoglobulin
V-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype
         (202 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    27   1.5  
SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase ...    25   7.8  

>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 5/49 (10%)

Query: 42  VVSHSDLTELAELAGVVPAWRELW----LGSLDALHREPSINNTQEDVL 86
           +V  +++ ++ EL  + P W E+W    L S+   H E SIN+    +L
Sbjct: 372 LVIDNEIKDVEELTKIEPFWEEIWKSHELPSIQ-FHLEASINDWTSGIL 419


>SPAC323.05c |||S-adenosylmethionine-dependent methyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 231

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 18/86 (20%), Positives = 35/86 (40%), Gaps = 2/86 (2%)

Query: 49  TELAELAGVVPAWRELWLGSLDALHREPSINNTQEDVLAQLGAVAFLHCPVRNLGERGVS 108
           TE  E+          W G  D +    ++ N  +D+L+Q G V ++    RN     + 
Sbjct: 136 TEFEEIPSEAATIASAWAGGTDGMDVTSTLLNQLKDILSQDG-VFYMVAVARN-KLHSIC 193

Query: 109 WVRRRDWHIISSGVLMYTNDERFQVL 134
            + ++D  I++  +      E   +L
Sbjct: 194 EILQKDGFIVNETLKRKAGRETLSIL 219


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 799,487
Number of Sequences: 5004
Number of extensions: 31802
Number of successful extensions: 54
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 54
Number of HSP's gapped (non-prelim): 2
length of query: 202
length of database: 2,362,478
effective HSP length: 69
effective length of query: 133
effective length of database: 2,017,202
effective search space: 268287866
effective search space used: 268287866
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)