GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000193-TA|BGIBMGA000193-PA|IPR013106|Immunoglobulin
V-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype
         (202 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0431 - 18152041-18152085,18152368-18152685,18152927-181534...    29   2.0  
05_07_0008 - 27007919-27007944,27008070-27008127,27008218-270082...    29   2.6  
05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671     27   7.9  
02_02_0682 - 12923103-12923747,12924607-12924870,12924953-129252...    27   7.9  

>07_03_0431 -
           18152041-18152085,18152368-18152685,18152927-18153482,
           18153886-18154577,18155234-18155614,18156159-18156241,
           18156618-18156786,18157498-18157543,18158301-18158389,
           18158476-18158591,18159137-18159443
          Length = 933

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)

Query: 99  VRNLGERGVSWVRRRDWHIISSG--VLMYTNDERFQVLHSEGSDD 141
           VRN  + G +W +++D   +      L   N+ER  V ++ G DD
Sbjct: 114 VRNFRKDGHNWKKKKDGRTVQEAHEKLKIGNEERVHVYYARGEDD 158


>05_07_0008 -
           27007919-27007944,27008070-27008127,27008218-27008292,
           27008417-27008470,27008574-27008840,27008913-27009193,
           27009268-27009409,27009491-27009601,27009975-27010013,
           27010173-27010310,27010415-27010552,27011438-27011562,
           27011702-27011723
          Length = 491

 Score = 29.1 bits (62), Expect = 2.6
 Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)

Query: 117 IISSGVLMYTNDERFQVLHSEGSDDWILQIK--YVQKRDNGTYECQVSTCQLSG 168
           I S+ +LMY +DE  + L       W+   K  +   +D G+YE  + TC+  G
Sbjct: 128 IFSNWLLMYLSDEEVEKLVGR-MVKWLKIFKECHSYDKDGGSYELSLETCKCIG 180


>05_04_0059 - 17570271-17571190,17571394-17571469,17571645-17571671
          Length = 340

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 4/62 (6%)

Query: 134 LHSEGSDDWILQIKYVQKRDNGTYECQVSTCQLSGTTEPSPTVPASTMTCNRQPAG-HAM 192
           +H EG      ++K V +R  G Y C V       T   +  V A T+    + AG HA 
Sbjct: 17  IHCEGCKK---KVKKVLQRVEGVYRCDVDGRSNKATVTVTGKVSADTLVRKLRRAGKHAE 73

Query: 193 GW 194
            W
Sbjct: 74  QW 75


>02_02_0682 -
           12923103-12923747,12924607-12924870,12924953-12925219,
           12925301-12925529,12925614-12926295,12926409-12926682,
           12926822-12927347,12927460-12927698,12927799-12927896,
           12928017-12928020,12928657-12928832,12929593-12929647,
           12930787-12931047
          Length = 1239

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 17/53 (32%), Positives = 27/53 (50%), Gaps = 1/53 (1%)

Query: 107 VSWVRRRDW-HIISSGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYE 158
           +S VR  D   ++  G L+        + +S G+   +LQ++ V  R NGTYE
Sbjct: 524 LSTVRNADTISVLHRGQLVEQGPHAELIKYSNGAYYQLLQLQEVNARRNGTYE 576


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,377,346
Number of Sequences: 37544
Number of extensions: 227008
Number of successful extensions: 534
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 4
length of query: 202
length of database: 14,793,348
effective HSP length: 79
effective length of query: 123
effective length of database: 11,827,372
effective search space: 1454766756
effective search space used: 1454766756
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 58 (27.5 bits)