GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000193-TA|BGIBMGA000193-PA|IPR013106|Immunoglobulin
V-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype
         (202 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.         28   0.17 

>AY239359-1|AAO73809.1| 2259|Anopheles gambiae dicer-1 protein.
          Length = 2259

 Score = 28.3 bits (60), Expect = 0.17
 Identities = 23/94 (24%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 99   VRNLGERGVSWVRRRDWHIISSGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTYE 158
            VRN G  G  W+R  D + ++         ER+ +       D  L  +  Q+ +  +  
Sbjct: 1536 VRN-GSSGERWLRLHDLYCLNRPFF----PERYTIFRGGSQFDNFLD-ESCQEGEGASSP 1589

Query: 159  CQVSTCQLSGTTEPSPTVPASTMTCNRQPAGHAM 192
             +V    +    +P P + A  M CN +P  H+M
Sbjct: 1590 PKVIELTIG---DPFPAIAAGQMACNYKPKQHSM 1620


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.318    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,391
Number of Sequences: 2123
Number of extensions: 7635
Number of successful extensions: 11
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 1
length of query: 202
length of database: 516,269
effective HSP length: 61
effective length of query: 141
effective length of database: 386,766
effective search space: 54534006
effective search space used: 54534006
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 46 (22.6 bits)