GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000193-TA|BGIBMGA000193-PA|IPR013106|Immunoglobulin
V-set, IPR007110|Immunoglobulin-like, IPR003599|Immunoglobulin subtype
         (202 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like...    29   1.6  
At4g21390.1 68417.m03090 S-locus lectin protein kinase family pr...    28   5.0  
At4g14070.1 68417.m02172 AMP-binding protein, putative similar t...    27   6.6  

>At1g49740.1 68414.m05578 expressed protein similar to MAP3K-like
           protein kinase GB:CAB16796 GI:4006878 from [Arabidopsis
           thaliana]
          Length = 359

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 21/90 (23%), Positives = 35/90 (38%), Gaps = 5/90 (5%)

Query: 98  PVRNLGERGVSWVRRRDWHIISSGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDNGTY 157
           PV  + + G  W R  D    +  +L++T+D      H E ++    Q KY+ +   G  
Sbjct: 199 PVSRMPKNGGDWPRLDDMVRKNQRLLVFTSDS-----HKEATEGIAYQWKYMVENQYGNG 253

Query: 158 ECQVSTCQLSGTTEPSPTVPASTMTCNRQP 187
             +V  C     + P      S +  N  P
Sbjct: 254 GLKVGVCPNRAQSAPMSDKSKSLVLVNHFP 283


>At4g21390.1 68417.m03090 S-locus lectin protein kinase family
           protein contains Pfam profiles: PF00954 S-locus
           glycoprotein family, PF00069 protein kinase domain,
           PF01453 lectin (probable mannose binding)
          Length = 849

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 17/55 (30%), Positives = 25/55 (45%), Gaps = 1/55 (1%)

Query: 101 NLGERGVSWVRRRDWHIIS-SGVLMYTNDERFQVLHSEGSDDWILQIKYVQKRDN 154
           N+ ++ V WV  R   I   SGVLM +ND    +L  +    W   I+     +N
Sbjct: 72  NIEDKAVVWVANRATPISDQSGVLMISNDGNLVLLDGKNITVWSSNIESSTTNNN 126


>At4g14070.1 68417.m02172 AMP-binding protein, putative similar to
           AMP-binding protein [gi:1617272] from Brassica napus;
           contains Pfam AMP-binding enzyme domain PF00501;
           identical to cDNA acyl-CoA synthetase-like protein
           GI:20799730
          Length = 727

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 168 GTTEPSPTVPASTMTCN-RQPAGHAM 192
           G TE SP V A T++CN    AGH M
Sbjct: 497 GLTETSPVVCARTLSCNVLGSAGHPM 522


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.131    0.415 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,190,320
Number of Sequences: 28952
Number of extensions: 171166
Number of successful extensions: 303
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 303
Number of HSP's gapped (non-prelim): 3
length of query: 202
length of database: 12,070,560
effective HSP length: 78
effective length of query: 124
effective length of database: 9,812,304
effective search space: 1216725696
effective search space used: 1216725696
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)