Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000192-TA|BGIBMGA000192-PA|undefined
         (176 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces pom...    33   0.018
SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces ...    27   1.2  
SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|...    26   3.6  

>SPAC1039.08 |||serine acetyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 8/84 (9%)

Query: 25  IFVPRAVWIRFEQERSASPEINPRLR--LTKADVTKKNHEINLCPTAMRDCVLVKRKEKA 82
           I + +A+W +  +E     E+NP L   L +  ++KK    +L       CVL    +  
Sbjct: 10  ITLVQAIWPKLRKEAEKQCEVNPWLAKDLARKILSKKTLRESL------SCVLALPLDHV 63

Query: 83  TACSLAMQSWFQSALLTPDIRALR 106
           T  S +M++WF S L   D + +R
Sbjct: 64  TGSSESMENWFYSILGLNDEKIIR 87


>SPAC9E9.12c |ybt1|abc1|ABC transporter Ybt1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1427

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 8/30 (26%), Positives = 18/30 (60%)

Query: 5   IATIHLVQAGVPTGDVSWLVIFVPRAVWIR 34
           +  +H++   + T  +S  + +VP+A W+R
Sbjct: 628 LGELHVISGKMTTPSISQRIAYVPQAAWLR 657


>SPAC2E1P3.04 |||copper amine oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 712

 Score = 25.8 bits (54), Expect = 3.6
 Identities = 12/48 (25%), Positives = 22/48 (45%)

Query: 28  PRAVWIRFEQERSASPEINPRLRLTKADVTKKNHEINLCPTAMRDCVL 75
           P  + +    E+     +  R+ LTKA+V +  H   +CP    D ++
Sbjct: 78  PERIALAVLLEKGVPGILEARVNLTKAEVIQIEHITGVCPILTADMLV 125


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 800,121
Number of Sequences: 5004
Number of extensions: 29236
Number of successful extensions: 62
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 2,362,478
effective HSP length: 68
effective length of query: 108
effective length of database: 2,022,206
effective search space: 218398248
effective search space used: 218398248
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 51 (24.6 bits)