Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000192-TA|BGIBMGA000192-PA|undefined
         (176 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.7  
SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)                  27   8.6  
SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_37393| Best HMM Match : MARVEL (HMM E-Value=0.0039)                 27   8.6  
SB_17742| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  
SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_55386| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 21/67 (31%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 54  ADVTKKNHEINLCPTAMRDCVLVKRKEKATACSLAMQSWFQSALLTPDIRALRYVDAKV- 112
           AD+ ++  E+   P  M D     R  +A A ++AM    +  L   +I   RY DA V 
Sbjct: 320 ADIVRRLDEVIRSPDKMNDEFAGSRISRAEATNIAMVKSVEEWL--ENINMGRYADAFVG 377

Query: 113 SGWVELN 119
           SG+V+++
Sbjct: 378 SGYVDID 384


>SB_47985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1681

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 20  VSWLVIFVPRAVWIRFEQERSASPE 44
           ++W+ IF P  V+IR  + +S SP+
Sbjct: 609 IAWVAIFQPAIVYIRSRKTKSRSPK 633


>SB_1550| Best HMM Match : Pkinase_Tyr (HMM E-Value=0)
          Length = 931

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 3/67 (4%)

Query: 54  ADVTKKNHEINLCPTAMRDCVLVKRKEKATACSLAMQSWFQSALLTPDIRALRYVDAKV- 112
           AD+ ++  E+   P  M D     R  +A A +++M    +  L   +I   RY DA V 
Sbjct: 825 ADIVRRFDEVIRSPDKMNDEFTGSRISRAEATNMSMVKSVEEWL--ENINMGRYADAFVS 882

Query: 113 SGWVELN 119
           SG+V+++
Sbjct: 883 SGYVDID 889


>SB_56543| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1076

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 4/57 (7%)

Query: 32  WIRFEQERSASP---EINPRLRLTKADVTKKNHEINLCPTAMRDCVLVKRKEKATAC 85
           WIR EQER  S    E   R R  +A V +KN    L  TA    +L + +     C
Sbjct: 299 WIRLEQERIQSQLFHEAQERQRTEQAIVRQKNFNA-LLQTAQMQLILNQEEFDCAIC 354


>SB_37393| Best HMM Match : MARVEL (HMM E-Value=0.0039)
          Length = 196

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 10  LVQAGVPTGDVSWLVIFVPRAVWIRFEQERSASPEINPRLRLTKAD 55
           L++A    G +S + +F+  A+W+  +  R+AS    PR    K D
Sbjct: 141 LLKAAAACGYIS-MFLFLGEAIWVFVQTRRAASEPSQPRGEDVKPD 185


>SB_17742| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 591

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)

Query: 131 AAPVLKDTAQYPGRCETKEQARADKNDRADVRELIYMYNEEN 172
           A  +LK   Q+  R ++KE+   D     +V+ L+Y++NE N
Sbjct: 484 ATNLLKLPIQFAWRSDSKEKF-TDALSSLEVQNLVYIFNETN 524


>SB_12109| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4085

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 2/32 (6%)

Query: 133 PVLKDTAQYPGRCETKEQARADKND--RADVR 162
           P LK   +YP   + ++ A+ADK D  +ADV+
Sbjct: 23  PKLKADKKYPAIADKEDPAKADKKDPAKADVK 54


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,959,081
Number of Sequences: 59808
Number of extensions: 220049
Number of successful extensions: 484
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 482
Number of HSP's gapped (non-prelim): 8
length of query: 176
length of database: 16,821,457
effective HSP length: 78
effective length of query: 98
effective length of database: 12,156,433
effective search space: 1191330434
effective search space used: 1191330434
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)