Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000192-TA|BGIBMGA000192-PA|undefined
         (176 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    23   2.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.2  
DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450 monoo...    22   3.9  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   6.8  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   6.8  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   8.9  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 12/47 (25%), Positives = 21/47 (44%)

Query: 27  VPRAVWIRFEQERSASPEINPRLRLTKADVTKKNHEINLCPTAMRDC 73
           VP  +    + + S SP++NP       D+ K +  IN+    +  C
Sbjct: 74  VPSNLNFFLKNDESESPKLNPYPNWEMNDINKIDSIINIIRVRVDAC 120


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 2.2
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 45  INPRLRLTKADVTKKNHEINLCPTAMR 71
           I P +R+T A    K  +  LCP A R
Sbjct: 191 IGPSIRITPAKKRIKLEQSPLCPPAPR 217


>DQ232888-1|ABB36783.1|  499|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 499

 Score = 21.8 bits (44), Expect = 3.9
 Identities = 10/39 (25%), Positives = 21/39 (53%)

Query: 103 RALRYVDAKVSGWVELNFREGRRLFHPFAAPVLKDTAQY 141
           + L+Y D K   +++  F+E  R++ P +  + K  + Y
Sbjct: 343 KELKYDDIKEMEYLDKVFKETLRMYPPASILMRKAISDY 381


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 121 REGRRLFH 128
           REGRR+FH
Sbjct: 646 REGRRIFH 653


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.0 bits (42), Expect = 6.8
 Identities = 7/8 (87%), Positives = 8/8 (100%)

Query: 121 REGRRLFH 128
           REGRR+FH
Sbjct: 614 REGRRIFH 621


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 20.6 bits (41), Expect = 8.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 137 DTAQYPGRCETKEQ 150
           DT +YP  C T E+
Sbjct: 273 DTTRYPHGCSTDEK 286


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,080
Number of Sequences: 429
Number of extensions: 2382
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 176
length of database: 140,377
effective HSP length: 54
effective length of query: 122
effective length of database: 117,211
effective search space: 14299742
effective search space used: 14299742
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 41 (20.6 bits)