GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000192-TA|BGIBMGA000192-PA|undefined
         (176 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_01_0087 + 1245890-1246565,1247409-1247484,1247774-1247893,124...    29   1.6  
01_05_0619 - 23737178-23737378,23737460-23737516,23737597-237377...    28   3.7  
05_07_0260 - 28739035-28739085,28739316-28739596,28740545-287405...    28   4.9  
01_05_0788 + 25223373-25223405,25224285-25224373,25224496-252246...    28   4.9  
10_08_0877 + 21230447-21230815,21231855-21232208,21232417-212325...    27   8.5  

>09_01_0087 +
           1245890-1246565,1247409-1247484,1247774-1247893,
           1248927-1249002,1250767-1250835,1251019-1251099,
           1251298-1251369,1251600-1251692,1251904-1252083,
           1252558-1252641,1252729-1252872,1253089-1253178,
           1255982-1256064,1256140-1256421,1256722-1256959,
           1258307-1258957
          Length = 1004

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 29/91 (31%), Positives = 39/91 (42%), Gaps = 1/91 (1%)

Query: 76  VKRKEKATACSLAMQSWFQSALLTPDIRALRYV-DAKVSGWVELNFREGRRLFHPFAAPV 134
           VK ++      L M S   SALLT   RAL YV  ++V   VE+      RL H     V
Sbjct: 458 VKHEDPCAGSDLEMDSRILSALLTGVNRALPYVASSEVDDIVEVQTPILFRLVHSVNFNV 517

Query: 135 LKDTAQYPGRCETKEQARADKNDRADVRELI 165
                    +  TK Q  +D+  RA   +L+
Sbjct: 518 GVQALMLLYQISTKNQIASDRFYRALYAKLL 548


>01_05_0619 -
           23737178-23737378,23737460-23737516,23737597-23737755,
           23739477-23739621,23739725-23740136,23740693-23740855
          Length = 378

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 120 FREGRRLFHPFAAPVLKDTAQYPG 143
           FR+G     P AAP ++D AQ+PG
Sbjct: 348 FRDGYSSRGPVAAPRIEDQAQFPG 371


>05_07_0260 -
           28739035-28739085,28739316-28739596,28740545-28740572,
           28740653-28740749,28741216-28741272,28741353-28741415,
           28741533-28741621,28741779-28741865,28742041-28742162,
           28742245-28742500,28742595-28742744,28743120-28743278,
           28743820-28743892,28743968-28744024,28744115-28744243,
           28744469-28744560,28745220-28745252
          Length = 607

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)

Query: 4   YIATIHL-VQAGVPTGDVSWLVIFVP 28
           YI+ IH+ +++  P G   WL+ FVP
Sbjct: 447 YISQIHIWLRSSTPNGQPKWLLSFVP 472


>01_05_0788 +
           25223373-25223405,25224285-25224373,25224496-25224624,
           25224710-25224766,25224844-25224916,25225509-25225667,
           25226755-25226904,25227013-25227268,25227358-25227479,
           25227531-25227599,25227653-25227739,25227842-25227930,
           25228168-25228224,25229162-25229258,25229348-25229506
          Length = 541

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 10/26 (38%), Positives = 18/26 (69%), Gaps = 1/26 (3%)

Query: 4   YIATIHL-VQAGVPTGDVSWLVIFVP 28
           YI+ IH+ +++ +P G   WL+ F+P
Sbjct: 448 YISQIHIWLRSNMPNGQPKWLLSFIP 473


>10_08_0877 +
           21230447-21230815,21231855-21232208,21232417-21232504,
           21232844-21233268,21233477-21233632,21233849-21234016,
           21234170-21234310,21234393-21234629,21234710-21234823,
           21235096-21235272
          Length = 742

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 6/79 (7%)

Query: 86  SLAMQSWFQSALLTPD-IRALRYVDAKVSGWVEL-----NFREGRRLFHPFAAPVLKDTA 139
           +L  + W QS  L P  +  L++ D +   W ++     N   GR   H      +    
Sbjct: 488 NLKSKFWGQSIQLDPSGVLTLQFDDGETFQWSKVTTTINNLIIGRVYCHHHGTMNISGNR 547

Query: 140 QYPGRCETKEQARADKNDR 158
           QY  +   KEQ+  D+N R
Sbjct: 548 QYSCKLTFKEQSFLDRNPR 566


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,138,063
Number of Sequences: 37544
Number of extensions: 189666
Number of successful extensions: 344
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 343
Number of HSP's gapped (non-prelim): 5
length of query: 176
length of database: 14,793,348
effective HSP length: 77
effective length of query: 99
effective length of database: 11,902,460
effective search space: 1178343540
effective search space used: 1178343540
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 57 (27.1 bits)