GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000192-TA|BGIBMGA000192-PA|undefined
         (176 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin Nipp...    28   8.1  
AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,...    28   8.1  
AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,...    28   8.1  

>AF114160-1|AAD26161.2| 2077|Drosophila melanogaster adherin
           Nipped-B protein.
          Length = 2077

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 42  SPEINPRLRLTKADVTKKNHEINLCPTAMRDCVLVKR 78
           SPE+   + L +    +++  +N+ PT+  +CVL  R
Sbjct: 389 SPELARSMGLLQETCQQQHENLNIIPTSAEECVLESR 425


>AE013599-26|EAA46003.3| 2077|Drosophila melanogaster CG17704-PF,
           isoform F protein.
          Length = 2077

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 42  SPEINPRLRLTKADVTKKNHEINLCPTAMRDCVLVKR 78
           SPE+   + L +    +++  +N+ PT+  +CVL  R
Sbjct: 389 SPELARSMGLLQETCQQQHENLNIIPTSAEECVLESR 425


>AE013599-25|EAA46004.3| 2077|Drosophila melanogaster CG17704-PE,
           isoform E protein.
          Length = 2077

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)

Query: 42  SPEINPRLRLTKADVTKKNHEINLCPTAMRDCVLVKR 78
           SPE+   + L +    +++  +N+ PT+  +CVL  R
Sbjct: 389 SPELARSMGLLQETCQQQHENLNIIPTSAEECVLESR 425


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,380,432
Number of Sequences: 52641
Number of extensions: 307354
Number of successful extensions: 525
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 522
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 24,830,863
effective HSP length: 80
effective length of query: 96
effective length of database: 20,619,583
effective search space: 1979479968
effective search space used: 1979479968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 59 (27.9 bits)