GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000192-TA|BGIBMGA000192-PA|undefined
         (176 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.           30   1.1  
U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog (hedgeh...    30   1.1  
Z81516-4|CAB04205.1|  208|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>U61235-1|AAB17540.1|  485|Caenorhabditis elegans ZK protein.
          Length = 485

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 29  RAVWIRFEQERSASPEINPRLRLTKAD-VTKKNHEINLCPTAMRDCVLVKRKEKATACSL 87
           +A +I+   E+ A  ++ P+  + KA+ VT++   +      + DC++VK  EK    ++
Sbjct: 340 KAAFIKLTTEQGAIIDMTPQHFIYKANCVTEEMELVYAEDMTIGDCLMVKENEKLVMTTI 399

Query: 88  AMQSWF 93
           + +S F
Sbjct: 400 SEKSTF 405


>U21308-4|AAB93321.1|  484|Caenorhabditis elegans Warthog
           (hedgehog-like family)protein 1 protein.
          Length = 484

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 17/66 (25%), Positives = 36/66 (54%), Gaps = 1/66 (1%)

Query: 29  RAVWIRFEQERSASPEINPRLRLTKAD-VTKKNHEINLCPTAMRDCVLVKRKEKATACSL 87
           +A +I+   E+ A  ++ P+  + KA+ VT++   +      + DC++VK  EK    ++
Sbjct: 339 KAAFIKLTTEQGAIIDMTPQHFIYKANCVTEEMELVYAEDMTIGDCLMVKENEKLVMTTI 398

Query: 88  AMQSWF 93
           + +S F
Sbjct: 399 SEKSTF 404


>Z81516-4|CAB04205.1|  208|Caenorhabditis elegans Hypothetical
           protein F26H9.6 protein.
          Length = 208

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 1/48 (2%)

Query: 12  QAGVPTGDVSWLVIFVPRAVWIRFEQERSASPEINPRLRLTKADVTKK 59
           QA +   D++    F     W++ E +R ASP I   L   KADV  K
Sbjct: 93  QAAIVVYDITNQESFQKAKNWVK-ELQRQASPNIVMALAGNKADVANK 139


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,362,222
Number of Sequences: 27539
Number of extensions: 161541
Number of successful extensions: 311
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 311
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 12,573,161
effective HSP length: 77
effective length of query: 99
effective length of database: 10,452,658
effective search space: 1034813142
effective search space used: 1034813142
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)