GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000192-TA|BGIBMGA000192-PA|undefined
         (176 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g13430.1 68417.m02096 aconitase family protein / aconitate hy...    31   0.58 
At2g34410.1 68415.m04217 O-acetyltransferase family protein simi...    27   9.4  
At2g22060.1 68415.m02620 expressed protein                             27   9.4  

>At4g13430.1 68417.m02096 aconitase family protein / aconitate
           hydratase family protein contains Pfam profile PF00330:
           Aconitase family (aconitate hydratase
          Length = 509

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 19/85 (22%), Positives = 40/85 (47%), Gaps = 3/85 (3%)

Query: 79  KEKATACSLAMQSWFQSALLTPDIRALRYVDAKVSGWVELNFREGRRLF---HPFAAPVL 135
           +E+ T C++ +++  ++ ++ PD   L YV+ + S   E  + +G   F   + F    L
Sbjct: 285 EERMTLCNMVVEAGGKNGVIPPDATTLNYVENRTSVPFEPVYSDGNASFVADYRFDVSKL 344

Query: 136 KDTAQYPGRCETKEQARADKNDRAD 160
           +     P   + +  AR  K+ + D
Sbjct: 345 EPVVAKPHSPDNRALARECKDVKID 369


>At2g34410.1 68415.m04217 O-acetyltransferase family protein similar
           to O-acetyltransferase (GI:17016934) [Homo sapiens];
           contains 11 transmembrane domains
          Length = 540

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)

Query: 4   YIATIHL-VQAGVPTGDVSWLVIFVPRAVWIRF 35
           YI+  H+ +++ VP G   WL+  +P    + F
Sbjct: 448 YISQFHIWLRSNVPNGQPKWLLCIIPEYPMLNF 480


>At2g22060.1 68415.m02620 expressed protein
          Length = 146

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)

Query: 103 RALRYVDAKVSGWVELNFREGRRL 126
           R L + D K++ W  LN R+G+ L
Sbjct: 48  RELMWADTKLNAWRRLNTRDGKTL 71


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.134    0.420 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,138,703
Number of Sequences: 28952
Number of extensions: 150656
Number of successful extensions: 277
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 275
Number of HSP's gapped (non-prelim): 3
length of query: 176
length of database: 12,070,560
effective HSP length: 76
effective length of query: 100
effective length of database: 9,870,208
effective search space: 987020800
effective search space used: 987020800
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 56 (26.6 bits)