Silkworm BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000191-TA|BGIBMGA000191-PA|undefined
         (175 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containi...    28   3.0  
At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kina...    27   5.3  

>At3g29290.1 68416.m03677 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 540

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 14/44 (31%), Positives = 23/44 (52%)

Query: 89  MERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQNATSEYN 132
           M +R  K N +   S+ R  +W +  +++E  LK V+   S YN
Sbjct: 451 MAQRDCKPNTFTYLSLVRSCIWGSLWDEVEDILKKVEPDVSLYN 494


>At3g14270.1 68416.m01806 phosphatidylinositol-4-phosphate 5-kinase
            family protein similar to SP|Q9Z1T6 FYVE
            finger-containing phosphoinositide kinase (EC 2.7.1.68)
            (1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
            (PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
            profiles PF01504: Phosphatidylinositol-4-phosphate
            5-Kinase, PF01363: FYVE zinc finger, PF00118: TCP-1/cpn60
            chaperonin family
          Length = 1791

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 12/22 (54%), Positives = 13/22 (59%)

Query: 143  RCLATGNNGPPSNCFFDKTVDD 164
            RC   G  G  SN FF KT+DD
Sbjct: 1527 RCKKWGAQGGKSNVFFAKTLDD 1548


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,585,951
Number of Sequences: 28952
Number of extensions: 109766
Number of successful extensions: 176
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 2
length of query: 175
length of database: 12,070,560
effective HSP length: 76
effective length of query: 99
effective length of database: 9,870,208
effective search space: 977150592
effective search space used: 977150592
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)