GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000191-TA|BGIBMGA000191-PA|undefined
         (175 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_1136 + 9012069-9012317,9013547-9013722,9014342-9014425,901...    29   1.6  
02_04_0230 + 21103524-21103746,21105393-21105661,21105845-211060...    27   6.3  

>01_01_1136 +
           9012069-9012317,9013547-9013722,9014342-9014425,
           9014757-9014826,9015644-9015652
          Length = 195

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 13/55 (23%), Positives = 24/55 (43%)

Query: 89  MERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQNATSEYNXXXXXXXRQHR 143
           +  +I ++ N  +     + VW  Q  Q+E+ L  +Q    EYN       R+ +
Sbjct: 136 LHHQIIRIENLELMLKYGVEVWKLQNRQMESVLSRMQKMAVEYNEKIETVNRERK 190


>02_04_0230 +
           21103524-21103746,21105393-21105661,21105845-21106009,
           21106081-21106203,21107261-21107473
          Length = 330

 Score = 27.5 bits (58), Expect = 6.3
 Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 84  IQRKLMERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQNATSEYNXXXXXXXRQHR 143
           +Q++LME + A+L    +A+  RLR  D +  +L+  L+  Q    E+         QH+
Sbjct: 272 LQQQLMEEQNARLEAERLAAEARLRS-DEEIRKLKKRLEKAQQENEEFRKMAS----QHK 326

Query: 144 C 144
           C
Sbjct: 327 C 327


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,484,190
Number of Sequences: 37544
Number of extensions: 134497
Number of successful extensions: 242
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 2
length of query: 175
length of database: 14,793,348
effective HSP length: 77
effective length of query: 98
effective length of database: 11,902,460
effective search space: 1166441080
effective search space used: 1166441080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)