GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA000191-TA|BGIBMGA000191-PA|undefined
         (175 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81140-2|CAB03486.1|  581|Caenorhabditis elegans Hypothetical pr...    34   0.049
X70835-1|CAA50183.1|  581|Caenorhabditis elegans Cytoplasmic int...    34   0.049
U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate fi...    30   0.79 
U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate fi...    30   0.79 
U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate fi...    30   0.79 
AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical...    28   3.2  
U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical pr...    27   7.4  
X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic int...    27   9.7  
U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate fi...    27   9.7  

>Z81140-2|CAB03486.1|  581|Caenorhabditis elegans Hypothetical
           protein W10G6.3 protein.
          Length = 581

 Score = 34.3 bits (75), Expect = 0.049
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 86  RKLMERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQ 125
           R+  ++ I +LN+ L + +E++R  DAQ  +L+  LKM+Q
Sbjct: 68  REREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQ 107


>X70835-1|CAA50183.1|  581|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 581

 Score = 34.3 bits (75), Expect = 0.049
 Identities = 15/40 (37%), Positives = 27/40 (67%)

Query: 86  RKLMERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQ 125
           R+  ++ I +LN+ L + +E++R  DAQ  +L+  LKM+Q
Sbjct: 68  REREKKEIMELNDRLASYIEKVRFLDAQNRKLDADLKMLQ 107


>U50197-4|AAA91257.1|  443|Caenorhabditis elegans Intermediate
           filament, d protein 2 protein.
          Length = 443

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 15/40 (37%), Positives = 23/40 (57%)

Query: 93  IAKLNNYLVASVERLRVWDAQQEQLETTLKMVQNATSEYN 132
           IA LNN L   VE++R  +AQ   LE  + + +NA   ++
Sbjct: 59  IADLNNRLARYVEKVRFLEAQNRVLENDIGVFRNAAHTHS 98


>U41538-7|AAP31430.1|  465|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform b protein.
          Length = 465

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 90  ERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQNA 127
           +R IA LNN L   VE++R  +AQ   LE  + + + A
Sbjct: 54  KREIADLNNRLARYVEKVRFLEAQNRVLENDIGLFRQA 91


>U41538-6|AAG00007.2|  575|Caenorhabditis elegans Intermediate
           filament, d protein1, isoform a protein.
          Length = 575

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 15/38 (39%), Positives = 22/38 (57%)

Query: 90  ERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQNA 127
           +R IA LNN L   VE++R  +AQ   LE  + + + A
Sbjct: 54  KREIADLNNRLARYVEKVRFLEAQNRVLENDIGLFRQA 91


>AL132904-24|CAC35834.2|  459|Caenorhabditis elegans Hypothetical
           protein Y111B2A.4 protein.
          Length = 459

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/40 (37%), Positives = 18/40 (45%)

Query: 111 DAQQEQLETTLKMVQNATSEYNXXXXXXXRQHRCLATGNN 150
           DAQ E L+T  K + NA +E N        QH      NN
Sbjct: 289 DAQIEDLKTQNKELANAYTELNEEFEGFKEQHTATQNANN 328


>U28737-9|AAA68276.1|  345|Caenorhabditis elegans Hypothetical
           protein F14B8.6 protein.
          Length = 345

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 17/69 (24%), Positives = 25/69 (36%), Gaps = 4/69 (5%)

Query: 111 DAQQEQLETTLKMVQNATSEY----NXXXXXXXRQHRCLATGNNGPPSNCFFDKTVDDDL 166
           +  Q  L  T+    N   +Y    N         + C   G+NG  + C       DD 
Sbjct: 140 NTNQWTLTATINRKCNGADQYGFNCNEQCSTVNNDYYCYTCGSNGQKTCCASGDVNPDDC 199

Query: 167 SFLRNPIET 175
           S+  +PI T
Sbjct: 200 SYYDHPIST 208


>X70833-1|CAA50181.1|  575|Caenorhabditis elegans Cytoplasmic
           intermediate filament(IF) protein protein.
          Length = 575

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/36 (25%), Positives = 25/36 (69%)

Query: 90  ERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQ 125
           ++ +++LN+ L + +E++R  +AQ  ++E  L +++
Sbjct: 71  KKEMSELNDRLASYIEKVRFLEAQNRKMEKDLNLLR 106


>U29379-3|AAF99979.3|  558|Caenorhabditis elegans Intermediate
           filament, a protein 4 protein.
          Length = 558

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/36 (25%), Positives = 25/36 (69%)

Query: 90  ERRIAKLNNYLVASVERLRVWDAQQEQLETTLKMVQ 125
           ++ +++LN+ L + +E++R  +AQ  ++E  L +++
Sbjct: 52  KKEMSELNDRLASYIEKVRFLEAQNRKMEKDLNLLR 87


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.137    0.426 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,835,329
Number of Sequences: 27539
Number of extensions: 121699
Number of successful extensions: 249
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 241
Number of HSP's gapped (non-prelim): 9
length of query: 175
length of database: 12,573,161
effective HSP length: 77
effective length of query: 98
effective length of database: 10,452,658
effective search space: 1024360484
effective search space used: 1024360484
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)